A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

U

UINT16 - org.sbml.jsbml.ext.spatial.DataKind

To indicate 16-bit unsigned integer

UINT32 - org.sbml.jsbml.ext.spatial.DataKind

To indicate 32-bit unsigned integer

UINT8 - org.sbml.jsbml.ext.spatial.DataKind

To indicate 8-bit unsigned integer

uMinus(ASTNode) - Static method in class org.sbml.jsbml.ASTNode

Creates a new ASTNode that has exactly one child and which is of type minus, i.e., this negates what is encoded in ast.

uMinus(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler

uMinus(ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Unary minus, i.e., negation of the given ASTNode.

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler

Deprecated.

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler

uMinus(ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory

Creates a new ASTMinusNode that has exactly one child and which is of type ASTNode.Type.MINUS, i.e., this negates what is encoded in ast.

uMinus(ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler

Unary minus, i.e., negation of the given ASTNode2.

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler

uMinus(MathContainer, CallableSBase) - Static method in class org.sbml.jsbml.ASTNode

Creates a new ASTNode that has exactly one child and which is of type minus, i.e., this negates what is encoded in ast.

unbound - org.sbml.jsbml.ext.multi.BindingStatus

UNCERT_ML_URI_L3 - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

UncertainProcessNode<T> - Interface in org.sbml.jsbml.ext.render.director

uncertainty - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

Uncertainty - Class in org.sbml.jsbml.ext.distrib

The Uncertainty class is a collection of zero or more statistical measures related to the uncertainty of the parent SBML element.

Uncertainty() - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates an Uncertainty instance

Uncertainty(int, int) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with a level and version.

Uncertainty(String) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with an id.

Uncertainty(String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with an id, level, and version.

Uncertainty(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with an id, name, level, and version.

Uncertainty(Uncertainty) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Clone constructor

uncertParameter - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

UncertParameter - Class in org.sbml.jsbml.ext.distrib

Defines one uncertainty statistic about the parent element.

UncertParameter() - Constructor for class org.sbml.jsbml.ext.distrib.UncertParameter

Creates an UncertParameter instance

UncertParameter(int, int) - Constructor for class org.sbml.jsbml.ext.distrib.UncertParameter

Creates a UncertParameter instance with a level and version.

UncertParameter(String) - Constructor for class org.sbml.jsbml.ext.distrib.UncertParameter

Creates a UncertParameter instance with an id.

UncertParameter(String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.UncertParameter

Creates a UncertParameter instance with an id, level, and version.

UncertParameter(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.UncertParameter

Creates a UncertParameter instance with an id, name, level, and version.

UncertParameter(UncertParameter) - Constructor for class org.sbml.jsbml.ext.distrib.UncertParameter

Clone constructor

UncertParameter.Type - Enum in org.sbml.jsbml.ext.distrib

The different UncertParameter and UncertSpan type values.

uncertSpan - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

UncertSpan - Class in org.sbml.jsbml.ext.distrib

The UncertSpan class defines a span of values that define an uncertainty statistic such as confidence interval or range.

UncertSpan() - Constructor for class org.sbml.jsbml.ext.distrib.UncertSpan

Creates an UncertSpan instance

UncertSpan(int, int) - Constructor for class org.sbml.jsbml.ext.distrib.UncertSpan

Creates a UncertSpan instance with a level and version.

UncertSpan(String) - Constructor for class org.sbml.jsbml.ext.distrib.UncertSpan

Creates a UncertSpan instance with an id.

UncertSpan(String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.UncertSpan

Creates a UncertSpan instance with an id, level, and version.

UncertSpan(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.UncertSpan

Creates a UncertSpan instance with an id, name, level, and version.

UncertSpan(UncertSpan) - Constructor for class org.sbml.jsbml.ext.distrib.UncertSpan

Clone constructor

uncertStatistics - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

uncertStatisticSpan - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

uncompressed - org.sbml.jsbml.ext.spatial.CompressionKind

If no compression is used

UndeclaredSpeciesInStoichMath - org.sbml.jsbml.SBMLException.Code

Undeclared species referenced in <stoichiometryMath> formula

UndeclaredSpeciesRef - org.sbml.jsbml.SBMLException.Code

Undeclared species referenced in kinetic law formula

UndeclaredUnits - org.sbml.jsbml.SBMLException.Code

Undeclared units

UNDEFINED - org.sbml.jsbml.ext.layout.SpeciesReferenceRole

UNDEFINED - org.sbml.jsbml.ext.render.director.SimpleLayoutAlgorithm.RelativePosition

UNDEFINED_LEVEL_VERSION_COMBINATION_MSG - Static variable in exception org.sbml.jsbml.LevelVersionError

Message to indicate that an invalid combination of the level and version attribute has been set.

UNDEFINED_MODEL_MSG - Static variable in class org.sbml.jsbml.JSBML

This indicates that the Model has not been set properly or that an element tries to access its containing model but this is not possible.

UNDEFINED_PARSE_ERROR_MSG - Static variable in class org.sbml.jsbml.JSBML

This message indicates that a problem occurred but the current class cannot give any more precise information about the reasons.

UNDEFINED_PARSING_ERROR_MSG - Static variable in class org.sbml.jsbml.JSBML

This message indicates that a problem occurred but the current class cannot give any more precise information about the reasons.

UndefinedOutsideCompartment - org.sbml.jsbml.SBMLException.Code

Undefined compartment used as outside value

underscore - Static variable in class org.sbml.jsbml.util.StringTools

The Character '_' as a String.

UNEXPECTED_ATTRIBUTE - Static variable in class org.sbml.jsbml.JSBML

union - org.sbml.jsbml.ext.spatial.SetOperation

UniqueNamedSBase - Interface in org.sbml.jsbml

This interface is used to tag all those elements whose identifier must be unique within an SBML Model before SBML Level 3 Version 2.

UniqueSId - Interface in org.sbml.jsbml

This interface is used to tag all those elements whose identifier must be unique within an SBML Model.

UniqueValidation<T,U> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Helper class which checks if all objects are unique.

UniqueValidation() - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UniqueValidation

unit - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants

Unit - Class in org.sbml.jsbml

Represents the unit XML element of a SBML file.

Unit() - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance.

Unit(double, int, Unit.Kind, double, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a multiplier, scale, kind and exponent.

Unit(int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a level and version.

Unit(int, Unit.Kind, double, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a scale, kind, exponent, level and version.

Unit(int, Unit.Kind, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a scale, kind, level and version.

Unit(String, int, int) - Constructor for class org.sbml.jsbml.Unit

Unit(Unit) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a given Unit.

Unit(Unit.Kind, double, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a kind, exponent, level and version.

Unit(Unit.Kind, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a kind, level and version.

Unit.Kind - Enum in org.sbml.jsbml

This enumeration contains an exhaustive list of all available unit kinds within all Levels and Versions of SBML.

UnitConstraints - Class in org.sbml.jsbml.validator.offline.constraints

UnitConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.UnitConstraints

UnitDefinition - Class in org.sbml.jsbml

Represents the unitDefinition XML element of a SBML file.

UnitDefinition() - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance.

UnitDefinition(int, int) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates a new UnitDefinition instance.

UnitDefinition(String) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates a new UnitDefinition instance.

UnitDefinition(String, int, int) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance from an id, level and version.

UnitDefinition(String, String, int, int) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance from an id, level and version.

UnitDefinition(UnitDefinition) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance from a given UnitDefinition.

UnitDefinitionConstraints - Class in org.sbml.jsbml.validator.offline.constraints

UnitDefinitionConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.UnitDefinitionConstraints

UnitException - Exception in org.sbml.jsbml.math.compiler

Exception to be thrown if inconsistent units are used in mathematical expressions, i.e., instances of ASTNode2.

UnitException - Exception in org.sbml.jsbml.util.compilers

Exception to be thrown if inconsistent units are used in mathematical expressions, i.e., instances of ASTNode.

UnitException() - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException() - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

UnitException(String) - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException(String) - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

UnitException(String, Throwable) - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException(String, Throwable) - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

UnitException(Throwable) - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException(Throwable) - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

unitRef - Static variable in class org.sbml.jsbml.ext.comp.CompConstants

units - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

units - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

UNITS_CONSISTENCY - org.sbml.jsbml.SBMLException.Category

Category of errors that can occur while validating the units of measurement on quantities in a model.

UNITS_CONSISTENCY - org.sbml.jsbml.validator.SBMLValidator.CHECK_CATEGORY

Consistency of measurement units associated with quantities in a model.

UnitsCompiler - Class in org.sbml.jsbml.math.compiler

Derives the units from mathematical operations.

UnitsCompiler - Class in org.sbml.jsbml.util.compilers

Derives the units from mathematical operations.

UnitsCompiler() - Constructor for class org.sbml.jsbml.math.compiler.UnitsCompiler

UnitsCompiler() - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

UnitsCompiler(int, int) - Constructor for class org.sbml.jsbml.math.compiler.UnitsCompiler

UnitsCompiler(int, int) - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

UnitsCompiler(Model) - Constructor for class org.sbml.jsbml.math.compiler.UnitsCompiler

UnitsCompiler(Model) - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

UnitsCompiler(Model, boolean) - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

UnitsCompiler(Model, ValidationContext) - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

unitSize - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants

UnitsNotValidAttribute - org.sbml.jsbml.SBMLException.Code

Attribute units not valid

unknown - org.sbml.jsbml.ext.qual.Sign

UNKNOWN - org.sbml.jsbml.ASTNode.Type

UNKNOWN_QUALIFIER - org.sbml.jsbml.CVTerm.Type

If the MIRIAM qualifier is unknown.

UNKNOWN_XML - Static variable in class org.sbml.jsbml.JSBML

Key used to store any unknown XML encountered while reading an SBML file.

UNKNOWN_XML_NODE - Static variable in class org.sbml.jsbml.SBMLReader

String used when reading an SBML file, to store XMLNode as user object when the XMLNode does not represents something known from the 'core'.

UnknownAttributeValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML attributes where found.

UnknownAttributeValidationFunction() - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownAttributeValidationFunction

UnknownCoreAttributeAbstractValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML attributes from SBML core where found.

UnknownCoreAttributeAbstractValidationFunction() - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownCoreAttributeAbstractValidationFunction

UnknownCoreAttributeValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML attributes from SBML core where found.

UnknownCoreAttributeValidationFunction() - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownCoreAttributeValidationFunction

UnknownCoreElementValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML elements where found.

UnknownCoreElementValidationFunction() - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownCoreElementValidationFunction

UnknownElementValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML elements where found.

UnknownElementValidationFunction() - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownElementValidationFunction

UnknownError - org.sbml.jsbml.SBMLException.Code

Unknown internal libSBML error

UnknownPackageAttributeValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML attributes from a specified package/namespace where found.

UnknownPackageAttributeValidationFunction(String) - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownPackageAttributeValidationFunction

Creates a new instance of UnknownPackageAttributeValidationFunction

UnknownPackageElementValidationFunction<T extends TreeNodeWithChangeSupport> - Class in org.sbml.jsbml.validator.offline.constraints.helper

Class used to check if any unknown XML elements where found.

UnknownPackageElementValidationFunction(String) - Constructor for class org.sbml.jsbml.validator.offline.constraints.helper.UnknownPackageElementValidationFunction

Creates a new instance of UnknownPackageElementValidationFunction

unknownValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

unknownValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler

unknownValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler

unknownValue() - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler

Dealing with a malformed ASTNode2.

unknownValue() - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler

unknownValue() - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler

unknownValue() - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler

unknownValue() - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler

unknownValue() - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Dealing with a malformed ASTNode.

unknownValue() - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler

unknownValue() - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler

unknownValue() - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler

unknownValue() - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler

Deprecated.

unknownValue() - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler

unmarshal(HierarchicalStreamReader, UnmarshallingContext) - Method in class org.sbml.jsbml.xml.xstream.converter.MessageConverter

unmarshal(HierarchicalStreamReader, UnmarshallingContext) - Method in class org.sbml.jsbml.xml.xstream.converter.SBMLErrorConverter

UnrecognisedSBOTerm - org.sbml.jsbml.SBMLException.Code

Unrecognized sboTerm value

UnrecognizedElement - org.sbml.jsbml.SBMLException.Code

Unrecognized element

unregister(SBase) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

unregister(SBase) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

unregister(SBase) - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin

unregister(SBase) - Method in class org.sbml.jsbml.KineticLaw

unregister(SBase) - Method in class org.sbml.jsbml.Model

unregister(SBase) - Method in interface org.sbml.jsbml.util.IdManager

Unregisters the given SBase element and all of it's children in this IdManager.

unregisterChild(SBase) - Method in class org.sbml.jsbml.AbstractSBase

unregisterChild(SBase) - Method in interface org.sbml.jsbml.SBase

Unregisters recursively the given SBase from the Model and SBMLDocument.

unsetAbsoluteValue() - Method in class org.sbml.jsbml.ext.render.RelAbsVector

Tries to unset the absolute value

unsetActiveObjective() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives

Unsets the variable activeObjective

unsetAddWhiskers() - Method in class org.sbml.jsbml.ext.render.director.LayoutDirector

Unsets the variable addWhiskers

unsetAnnotation() - Method in class org.sbml.jsbml.AbstractSBase

unsetAnnotation() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'annotation' sub-element of this SBML object.

unsetApplyToAll() - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin

Unsets the applyToAll field

unsetAreaUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.areaUnitsID of this Model to null.

unsetArrayData() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable arrayData.

unsetArrayDataLength() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable arrayDataLength.

unsetArrayDimension() - Method in class org.sbml.jsbml.ext.arrays.Dimension

Unsets the variable arrayDimension

unsetArrayDimension() - Method in class org.sbml.jsbml.ext.arrays.Index

Unsets the variable arrayDimension

unsetAssociatedSpecies() - Method in class org.sbml.jsbml.ext.fbc.GeneProduct

Unsets the variable associatedSpecies.

unsetAssociation() - Method in class org.sbml.jsbml.ext.fbc.GeneProductAssociation

Unsets the variable association.

unsetBackgroundColor() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable backgroundColor

unsetBasePoint1() - Method in class org.sbml.jsbml.ext.layout.CubicBezier

Unsets the Base point 1 (and fires appropriate event)

unsetBasePoint2() - Method in class org.sbml.jsbml.ext.layout.CubicBezier

Unsets the Base point 2 (and fires appropriate event)

unsetBindingSite1() - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond

Unsets the variable bindingSite1.

unsetBindingSite2() - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond

Unsets the variable bindingSite2.

unsetBindingStatus() - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite

Unsets the variable bindingStatus.

unsetBiologicalQualifierType() - Method in class org.sbml.jsbml.CVTerm

Unsets the biological qualifier if it is set and of the type CVTerm.Type.BIOLOGICAL_QUALIFIER

unsetBoundaryDomainType() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

Unsets the variable boundaryDomainType

unsetBoundaryMaximum() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable boundaryMaximum

unsetBoundaryMinimum() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable boundaryMinimum

unsetBoundingBox() - Method in class org.sbml.jsbml.ext.layout.GraphicalObject

unsetBoundingBox() - Method in interface org.sbml.jsbml.ext.layout.IBoundingBox

Unsets the BoundingBox.

unsetBoundingBox() - Method in class org.sbml.jsbml.ext.render.LineEnding

Unsets the variable boundingBox

unsetCBOTerm() - Method in class org.sbml.jsbml.ext.dyn.DynSBasePlugin

Unsets the cboTerm field

unsetChangedBy() - Method in class org.sbml.jsbml.ext.req.ChangedMath

Unsets the variable changedBy

unsetCharge() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin

Unsets the variable charge

unsetCharge() - Method in class org.sbml.jsbml.Species

Deprecated.

Only defined in SBML Level 1, Version 1 and 2, and Level 2 Version 1. Since Level 2 Version 2 it has been marked as a deprecated property, but has been completely removed in SBML Level 3.

unsetChemicalFormula() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin

Unsets the variable chemicalFormula

unsetCoefficient() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective

Unsets the variable coefficient

unsetCompartment() - Method in interface org.sbml.jsbml.CompartmentalizedSBase

Remove the reference to a compartment, i.e., unset the value of the variable 'compartment'.

unsetCompartment() - Method in class org.sbml.jsbml.ext.layout.CompartmentGlyph

unsetCompartment() - Method in class org.sbml.jsbml.ext.multi.CompartmentReference

unsetCompartment() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType

unsetCompartment() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetCompartment() - Method in class org.sbml.jsbml.Reaction

unsetCompartment() - Method in class org.sbml.jsbml.Species

unsetCompartmentMapping() - Method in class org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin

Unsets the variable compartmentMapping

unsetCompartmentReference() - Method in class org.sbml.jsbml.ext.multi.MultiSimpleSpeciesReferencePlugin

Unsets the variable compartmentReference.

unsetCompartmentReference() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance

Unsets the variable compartmentReference.

unsetCompartmentType() - Method in class org.sbml.jsbml.Compartment

Sets the compartmentTypeID of this Compartment to null.

unsetCompartmentType() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

Unsets the variable compartmentType.

unsetComplementA() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Unsets the variable complementA

unsetComplementB() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Unsets the variable complementB

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite

Unsets the variable component.

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Unsets the variable component.

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex

Unsets the variable component.

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.SubListOfSpeciesFeature

Unsets the variable component.

unsetComponents() - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent

Unsets the variable components

unsetComponentsLength() - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent

Unsets the variable componentsLength

unsetCompression() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable compression.

unsetCompression() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable compression

unsetCompression() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable compression.

unsetConstant() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetConstant() - Method in class org.sbml.jsbml.SpeciesReference

unsetConstant() - Method in class org.sbml.jsbml.Symbol

unsetConstant() - Method in interface org.sbml.jsbml.Variable

With this method the constant property of this variable will be set to an undefined state.

unsetConversionFactor() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

Unsets the variable conversionFactor

unsetConversionFactor() - Method in class org.sbml.jsbml.Model

Sets the Model.conversionFactorID of this Model to null.

unsetConversionFactor() - Method in class org.sbml.jsbml.Species

Unsets the conversionFactorID of this Species.

unsetCoord1() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

Unsets the variable coord1

unsetCoord2() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

Unsets the variable coord2

unsetCoord3() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

Unsets the variable coord3

unsetCoordinate() - Method in class org.sbml.jsbml.ext.spatial.AdvectionCoefficient

Unsets the variable coordinate

unsetCoordinateBoundary() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

Unsets the variable coordinateBoundary

unsetCoordinateReference1() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

Unsets the variable coordinateReference1

unsetCoordinateReference2() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

Unsets the variable coordinateReference2

unsetCoordinateSystem() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Unsets the variable coordinateSystem

unsetCreatedDate() - Method in class org.sbml.jsbml.History

Sets the created of this History to null.

unsetCSGNode() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

Unsets the variable csgNode

unsetCSGNode() - Method in class org.sbml.jsbml.ext.spatial.CSGTransformation

Unsets the variable csgNode

unsetCsgObjectRef() - Method in class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive

Unsets the variable csgObjectRef

unsetCurve() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph

Unsets the curve (and fires appropriate Event)

unsetCurve() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

Unsets the curve (and fires appropriate Event)

unsetCurve() - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph

unsetCurve() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

unsetCVTerms - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

unsetCVTerms() - Method in class org.sbml.jsbml.AbstractSBase

unsetCVTerms() - Method in class org.sbml.jsbml.Annotation

Clears the List of CVTerms.

unsetCVTerms() - Method in interface org.sbml.jsbml.SBase

Unsets the list of CVTerm of this object.

unsetCx() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable cx

unsetCx() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable cx

unsetCy() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable cy

unsetCy() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable cy

unsetCz() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable cz

unsetCz() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable cz

unsetData() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable data

unsetDataType() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable dataType.

unsetDataType() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable dataType

unsetDataType() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable dataType.

unsetDefaultValues() - Method in class org.sbml.jsbml.ext.render.ListOfRenderInformation

Unsets the variable defaultValues.

unsetDefinitionURL() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Unsets the variable definitionURL.

unsetDelay() - Method in class org.sbml.jsbml.Event

Sets the delay of this Event to null.

unsetDeletion() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

Unsets the variable deletion

unsetDepth() - Method in class org.sbml.jsbml.ext.layout.Dimensions

Unsets the (optional) depth-attribute

unsetDimensions() - Method in class org.sbml.jsbml.ext.layout.BoundingBox

Unsets the dimensions (and fires an appropriate event)

unsetDimensions() - Method in class org.sbml.jsbml.ext.layout.Layout

Unsets the Layout.dimensions (and fires appropriate event)

unsetDistinctAttribute() - Method in class org.sbml.jsbml.ext.groups.MemberConstraint

Deprecated.

Unsets the variable distinctAttribute

unsetDomain() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable domain

unsetDomain1() - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains

Unsets the variable domain1

unsetDomain2() - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains

Unsets the variable domain2

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.Domain

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable domainType

unsetElementName() - Method in class org.sbml.jsbml.ext.spatial.Boundary

Unsets the variable elementName.

unsetEmail() - Method in class org.sbml.jsbml.Creator

Unsets the email of this Creator.

unsetEnableRotationMapping() - Method in class org.sbml.jsbml.ext.render.LineEnding

Unsets the variable LineEnding.enableRotationMapping

unsetEnd() - Method in class org.sbml.jsbml.ext.layout.CurveSegment

Unsets the end-point of this CurveSegment

unsetEnd() - Method in class org.sbml.jsbml.ext.layout.LineSegment

Unsets the end-point of this LineSegment

unsetEnd() - Method in class org.sbml.jsbml.xml.XMLToken

Declares this XML start/end element is no longer an end element.

unsetEndHead() - Method in class org.sbml.jsbml.ext.render.RenderCurve

Unsets the variable endHead

unsetEndHead() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable endHead

unsetExponent() - Method in class org.sbml.jsbml.Unit

unsetExtension(String) - Method in class org.sbml.jsbml.AbstractSBase

unsetExtension(String) - Method in class org.sbml.jsbml.ASTNode

Unsets the ASTNodePlugin extension object which matches this package name or URI.

unsetExtension(String) - Method in interface org.sbml.jsbml.SBase

Unsets the SBasePlugin extension object which matches this package name or URI.

unsetExtentConversionFactor() - Method in class org.sbml.jsbml.ext.comp.Submodel

Unsets the variable extentConversionFactor

unsetExtentUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.extentUnitsID of this Model to null.

unsetFamilyName() - Method in class org.sbml.jsbml.Creator

Unsets the familyName of this Creator.

unsetFast() - Method in class org.sbml.jsbml.Reaction

Deprecated.

unsetField() - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent

Unsets the variable field

unsetFill() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D

Unsets the variable fill

unsetFillRule() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D

Unsets the variable fillRule

unsetFontFamily() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontFamily

unsetFontFamily() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontFamily

unsetFontFamily() - Method in class org.sbml.jsbml.ext.render.Text

unsetFontSize() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontSize

unsetFontSize() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontSize

unsetFontSize() - Method in class org.sbml.jsbml.ext.render.Text

unsetFontStyleItalic() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontStyleItalic

unsetFontStyleItalic() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontStyleItalic

unsetFontStyleItalic() - Method in class org.sbml.jsbml.ext.render.Text

unsetFontWeightBold() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontWeightBold

unsetFontWeightBold() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontWeightBold

unsetFontWeightBold() - Method in class org.sbml.jsbml.ext.render.Text

unsetFormula() - Method in class org.sbml.jsbml.AbstractMathContainer

Deprecated.

unsetFormula() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Deprecated.

unsetFormula() - Method in interface org.sbml.jsbml.MathContainer

Deprecated.

use MathContainer.unsetMath()

unsetForwardTransformation() - Method in class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation

Unsets the variable forwardTransformation

unsetFunctionType() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

Unsets the variable functionType

unsetFx() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable fx

unsetFy() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable fy

unsetFz() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable fz

unsetGeneProduct() - Method in class org.sbml.jsbml.ext.fbc.GeneProductRef

Unsets the variable geneProduct

unsetGeneProductAssociation() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

Unsets the variable FBCReactionPlugin.geneProductAssociation.

unsetGeometry() - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin

Unsets the variable geometry

unsetGeometryDefinition() - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping

Unsets the variable geometryDefinition

unsetGivenName() - Method in class org.sbml.jsbml.Creator

Unsets the givenName of this Creator.

unsetGlyph() - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph

Unsets the ReferenceGlyph.glyph attribute

unsetGraphicalObject() - Method in class org.sbml.jsbml.ext.layout.TextGlyph

unsetGroup() - Method in class org.sbml.jsbml.ext.render.LineEnding

Unsets the variable group

unsetGroup() - Method in class org.sbml.jsbml.ext.render.Style

Unsets the variable group

unsetHeight() - Method in class org.sbml.jsbml.ext.layout.Dimensions

Unsets the required height-attribute

unsetHeight() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable height

unsetHeight() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable height

unsetHistory() - Method in class org.sbml.jsbml.AbstractSBase

unsetHistory() - Method in class org.sbml.jsbml.Annotation

Sets the History instance of this object to null.

unsetHistory() - Method in interface org.sbml.jsbml.SBase

Unsets the History of this object.

unsetHref() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable href

unsetId() - Method in class org.sbml.jsbml.AbstractSBase

unsetId() - Method in interface org.sbml.jsbml.NamedSBase

Sets the id value to null.

unsetId() - Method in interface org.sbml.jsbml.SBase

Sets the id value to null.

unsetIdenticalAttribute() - Method in class org.sbml.jsbml.ext.groups.MemberConstraint

Deprecated.

Unsets the variable identicalAttribute

unsetIDList() - Method in class org.sbml.jsbml.ext.render.LocalStyle

Unsets the variable idList

unsetIdRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable idRef

unsetIdRef() - Method in class org.sbml.jsbml.ext.dyn.DynElement

Unsets the variable idRef

unsetIdRef() - Method in class org.sbml.jsbml.ext.groups.Member

Unsets the variable idRef

unsetidToValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

Returns true, if idToValue contain at least one element, otherwise false.

unsetIndentifyingParent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex

Unsets the variable identifyingParent.

unsetInitialAmount() - Method in class org.sbml.jsbml.Species

Unsets the initialAmount of this Species.

unsetInitialConcentration() - Method in class org.sbml.jsbml.Species

Unsets the initialConcentration of this Species.

unsetInitialLevel() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetInterpolation() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable interpolation type

unsetInterpolationType() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable interpolation type

unsetIsActive() - Method in class org.sbml.jsbml.ext.spatial.GeometryDefinition

Unsets the variable isActive

unsetIsLocal() - Method in class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin

Unsets the variable isLocal

unsetIsType() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

Unsets the variable isType.

unsetKind() - Method in class org.sbml.jsbml.Unit

unsetKineticLaw() - Method in class org.sbml.jsbml.Reaction

Sets the KineticLaw of this Reaction to null and notifies all TreeNodeChangeListener about changes.

unsetLabel() - Method in class org.sbml.jsbml.ext.fbc.GeneProduct

Unsets the variable GeneProduct.label

unsetLengthUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.lengthUnitsID of this Model to null.

unsetListOfAdditionalGraphicalObjects() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfAdditionalGraphicalObjects from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfAdjacentDomains() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfAdjacentDomains contain at least one element, otherwise false

unsetListOfAnalyticVolumes() - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry

Returns true, if listOfAnalyticVolumes contain at least one element, otherwise false

unsetListOfChangedMaths() - Method in class org.sbml.jsbml.ext.req.ReqSBasePlugin

Removes all of the elements from this list of ChangedMaths.

unsetListOfColorDefinitions() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

unsetListOfCompartmentGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfCompartmentGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCompartmentReferences() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

Returns true if MultiCompartmentPlugin.listOfCompartmentReferences contains at least one element, otherwise false.

unsetListOfCompartments() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfCompartments from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCompartmentTypes() - Method in class org.sbml.jsbml.Model

Deprecated.

Only valid in SBML Level 2 for Versions 2 through 4.

unsetListOfConstraints() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfConstraints from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCoordinateComponents() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfCoordinateComponents contain at least one element, otherwise false

unsetListOfCSGNodes() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Returns true, if listOfCSGNodes contain at least one element, otherwise false

unsetListOfCSGObjects() - Method in class org.sbml.jsbml.ext.spatial.CSGeometry

Returns true, if listOfCSGObjects contain at least one element, otherwise false

unsetListOfCurveSegments() - Method in class org.sbml.jsbml.ext.layout.Curve

unsetListOfCurveSegments() - Method in interface org.sbml.jsbml.ext.layout.ICurve

Removes the #listOfCurveSegments from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCurveSegments() - Method in class org.sbml.jsbml.ext.render.Polygon

Returns true if Polygon.listOfCurveSegments contains at least one element, otherwise false.

unsetListOfCurveSegments() - Method in class org.sbml.jsbml.ext.render.RenderCurve

Returns true if RenderCurve.listOfCurveSegments contains at least one element, otherwise false.

unsetListOfDeletions() - Method in class org.sbml.jsbml.ext.comp.Submodel

Returns true, if listOfDeletions contain at least one element, otherwise false

unsetListOfDimensions() - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

Returns true, if listOfDimensions contain at least one element, otherwise false.

unsetListOfDomains() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfDomains contain at least one element, otherwise false

unsetListOfDomainTypes() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfDomainTypes contain at least one element, otherwise false

unsetListOfDynElements() - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin

Unsets the variable listOfDynElements

unsetListOfElements() - Method in class org.sbml.jsbml.ext.render.Polygon

Unsets the variable listOfElements

unsetListOfElements() - Method in class org.sbml.jsbml.ext.render.RenderCurve

unsetListOfElements() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Returns true, if listOfElements contain at least one element, otherwise false.

unsetListOfEventAssignments() - Method in class org.sbml.jsbml.Event

Removes the Event.listOfEventAssignments from this Event and notifies all registered instances of TreeNodeChangeListener.

unsetListOfEvents() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfEvents from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfExternalModelDefinitions() - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin

Returns true, if listOfExternalModelDefinitions contain at least one element, otherwise false

unsetListOfFluxBounds() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Deprecated.

Only defined in FBC version 1.

unsetListOfFluxObjectives() - Method in class org.sbml.jsbml.ext.fbc.Objective

Unsets the listOfFluxObjectives.

unsetListOfFunctionDefinitions() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfFunctionDefinitions from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfFunctionTerms() - Method in class org.sbml.jsbml.ext.qual.Transition

unsetListOfGeneProducts() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Returns true if FBCModelPlugin.listOfGeneProducts contains at least one element, otherwise false.

unsetListOfGeometryDefinitions() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfGeometryDefinitions contain at least one element, otherwise false

unsetListOfGeometryDefinitions() - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry

Returns true, if listOfGeometryDefinitions contain at least one element, otherwise false

unsetListOfGlobalRenderInformation() - Method in class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin

unsetListOfGradientDefinitions() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

unsetListOfGradientStops() - Method in class org.sbml.jsbml.ext.render.GradientBase

unsetListOfGroups() - Method in class org.sbml.jsbml.ext.groups.GroupsModelPlugin

Removes the GroupsModelPlugin.listOfGroups from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfIndices() - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

Returns true, if listOfIndices contain at least one element, otherwise false.

unsetListOfInitialAssignments() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfInitialAssignments from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfInputs() - Method in class org.sbml.jsbml.ext.qual.Transition

unsetListOfInSpeciesTypeBonds() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType

Returns true if MultiSpeciesType.listOfInSpeciesTypeBonds contains at least one element, otherwise false.

unsetListOfInteriorPoints() - Method in class org.sbml.jsbml.ext.spatial.Domain

Returns true, if listOfInteriorPoints contain at least one element, otherwise false

unsetListOfLayouts() - Method in class org.sbml.jsbml.ext.layout.LayoutModelPlugin

Removes the LayoutModelPlugin.listOfLayouts from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfLineEndings() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

unsetListOfLocalParameters() - Method in class org.sbml.jsbml.KineticLaw

Removes the KineticLaw.listOfLocalParameters from this KineticLaw and notifies all registered instances of TreeNodeChangeListener.

unsetListOfLocalRenderInformation() - Method in class org.sbml.jsbml.ext.render.RenderLayoutPlugin

unsetListOfLocalStyles() - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation

unsetListOfMembers() - Method in class org.sbml.jsbml.ext.groups.Group

Returns true if Group.listOfMembers contains at least one element, otherwise false.

unsetListOfModelDefinitions() - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin

Returns true, if listOfModelDefinitions contain at least one element, otherwise false

unsetListOfModifiedDates() - Method in class org.sbml.jsbml.History

Sets the created of this History to null.

unsetListOfModifiers() - Method in class org.sbml.jsbml.Reaction

Removes the Reaction.listOfModifiers from this Reaction and notifies all registered instances of TreeNodeChangeListener.

unsetListOfNestedCVTerms() - Method in class org.sbml.jsbml.CVTerm

Returns true if CVTerm.listOfNestedCVTerms contains at least one element, otherwise false.

unsetListOfObjectives() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Returns true if listOfObjectives contain at least one element, otherwise false

unsetListOfOrdinalMappings() - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry

Returns true, if listOfOrdinalMappings contain at least one element, otherwise false

unsetListOfOutputs() - Method in class org.sbml.jsbml.ext.qual.Transition

unsetListOfOutwardBindingSites() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Returns true if MultiSpeciesPlugin.listOfOutwardBindingSites contains at least one element, otherwise false.

unsetListOfParameters() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

use KineticLaw.unsetListOfLocalParameters()

unsetListOfParameters() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfParameters from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfParametricObjects() - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry

Returns true, if listOfParametricObjects contain at least one element, otherwise false

unsetListOfPorts() - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

Returns true, if listOfPorts contain at least one element, otherwise false

unsetListOfPossibleSpeciesFeatureValues() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType

Returns true if SpeciesFeatureType.listOfPossibleSpeciesFeatureValues contains at least one element, otherwise false.

unsetListOfProducts() - Method in class org.sbml.jsbml.Reaction

Removes the Reaction.listOfProducts from this Reaction and notifies all registered instances of TreeNodeChangeListener.

unsetListOfQualitativeSpecies() - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin

unsetListOfReactants() - Method in class org.sbml.jsbml.Reaction

Removes the Reaction.listOfReactants from this Reaction and notifies all registered instances of TreeNodeChangeListener.

unsetListOfReactionGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfReactionGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfReactions() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfReactions from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfReplacedElements() - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin

Returns true, if listOfReplacedElements contained at least one element, otherwise false

unsetListOfRules() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfRules from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfSampledFields() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfSampledFields contain at least one element, otherwise false

unsetListOfSampledVolumes() - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry

Returns true, if listOfSampledVolumes contain at least one element, otherwise false

unsetListOfSpatialComponents() - Method in class org.sbml.jsbml.ext.dyn.DynCompartmentPlugin

Unsets the variable listOfSpatialComponents

unsetListOfSpecies() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfSpecies from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfSpeciesFeatures() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Returns true if MultiSpeciesPlugin.listOfSpeciesFeatures contains at least one element, otherwise false.

unsetListOfSpeciesFeatureTypes() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType

Returns true if MultiSpeciesType.listOfSpeciesFeatureTypes contains at least one element, otherwise false.

unsetListOfSpeciesFeatureValues() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Returns true if SpeciesFeature.listOfSpeciesFeatureValues contains at least one element, otherwise false.

unsetListOfSpeciesGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfSpeciesGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfSpeciesReferenceGlyphs() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

Unsets the list of SpeciesReferenceGlyphs.

unsetListOfSpeciesReferencesGlyph() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

Deprecated.

use ReactionGlyph.unsetListOfSpeciesReferenceGlyphs()

unsetListOfSpeciesTypeComponentIndexes() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType

Returns true if MultiSpeciesType.listOfSpeciesTypeComponentIndexes contains at least one element, otherwise false.

unsetListOfSpeciesTypeComponentMapInProducts() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesReferencePlugin

Returns true if MultiSpeciesReferencePlugin.listOfSpeciesTypeComponentMapInProducts contains at least one element, otherwise false.

unsetListOfSpeciesTypeInstances() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType

Returns true if MultiSpeciesType.listOfSpeciesTypeInstances contains at least one element, otherwise false.

unsetListOfSpeciesTypes() - Method in class org.sbml.jsbml.ext.multi.MultiModelPlugin

Sets the listOfSpeciesTypes to null

unsetListOfSpeciesTypes() - Method in class org.sbml.jsbml.Model

Deprecated.

Only valid in SBML Level 2 for Versions 2 through 4.

unsetListOfStyles() - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation

unsetListOfSubGlyphs() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph

Returns true, if listOfSubGlyphs contain at least one element, otherwise false

unsetListOfSubListOfSpeciesFeatures() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Returns true if MultiSpeciesPlugin.listOfSubListOfSpeciesFeatures contains at least one element, otherwise false.

unsetListOfSubmodels() - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

Returns true, if listOfSubmodels contain at least one element, otherwise false

unsetListOfTextGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfTextGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfTransitions() - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin

unsetListOfUncertainties() - Method in class org.sbml.jsbml.ext.distrib.DistribSBasePlugin

Returns true if DistribSBasePlugin.listOfUncertainties contains at least one element, otherwise false.

unsetListOfUncertParameters() - Method in class org.sbml.jsbml.ext.distrib.Uncertainty

Returns true if Uncertainty.listOfUncertParameters contains at least one element, otherwise false.

unsetListOfUncertParameters() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Returns true if UncertParameter.listOfUncertParameters contains at least one element, otherwise false.

unsetListOfUnitDefinitions() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfUnitDefinitions from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfUnits() - Method in class org.sbml.jsbml.UnitDefinition

Removes the UnitDefinition.listOfUnits from this UnitDefinition and notifies all registered instances of TreeNodeChangeListener.

unsetLowerFluxBound() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

Unsets the variable lowerFluxBound.

unsetMath() - Method in class org.sbml.jsbml.AbstractMathContainer

unsetMath() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

unsetMath() - Method in interface org.sbml.jsbml.MathContainer

Sets the current ASTNode math element of this MathContainer to null and notifies all TreeNodeChangeListeners assigned to this object about this change.

unsetMaxLevel() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetMaxValue() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable maxValue

unsetMd5() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

Unsets the variable md5

unsetMembersShareType() - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint

Deprecated.

Unsets the variable membersShareType

unsetMessage() - Method in class org.sbml.jsbml.Constraint

Sets the message of this Constraint to null.

unsetMetaId() - Method in class org.sbml.jsbml.AbstractSBase

unsetMetaId() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'metaid' attribute of this SBML object.

unsetMetaidRef() - Method in class org.sbml.jsbml.ext.layout.GraphicalObject

Unsets the variable metaidRef

unsetMetaIdRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable metaIdRef

unsetMetaIdRef() - Method in class org.sbml.jsbml.ext.dyn.DynElement

Unsets the variable metaIdRef

unsetMetaIdRef() - Method in class org.sbml.jsbml.ext.groups.Member

Unsets the variable metaIdRef

unsetMinValue() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable minValue

unsetModel() - Method in class org.sbml.jsbml.SBMLDocument

Sets the Model of this SBMLDocument to null and notifies all TreeNodeChangeListener about changes.

unsetModelHistory() - Method in class org.sbml.jsbml.Model

Deprecated.

use AbstractSBase.unsetHistory().

unsetModelQualifierType() - Method in class org.sbml.jsbml.CVTerm

Unsets the CVTerm.Qualifier if it is set and of the type CVTerm.Type.MODEL_QUALIFIER.

unsetModelRef() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

Unsets the variable modelRef

unsetModelRef() - Method in class org.sbml.jsbml.ext.comp.Submodel

Unsets the variable modelRef

unsetMultiplier() - Method in class org.sbml.jsbml.Unit

unsetName() - Method in class org.sbml.jsbml.AbstractSBase

unsetName() - Method in interface org.sbml.jsbml.NamedSBase

Sets the name value to null.

unsetName() - Method in interface org.sbml.jsbml.SBase

Sets the name value to null.

unsetNamespace() - Method in class org.sbml.jsbml.AbstractSBase

Unsets the namespace that is associated to this SBase.

unsetNonRDFannotation() - Method in class org.sbml.jsbml.Annotation

Sets the non RDF annotation String to null.

unsetNotes() - Method in class org.sbml.jsbml.AbstractSBase

unsetNotes() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'notes' sub-element of this SBML object.

unsetNumericValue() - Method in class org.sbml.jsbml.ext.multi.PossibleSpeciesFeatureValue

Unsets the variable numericValue.

unsetNumSamples1() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable numSamples1

unsetNumSamples2() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable numSamples2

unsetNumSamples3() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable numSamples3

unsetObjectRole() - Method in class org.sbml.jsbml.ext.render.RenderGraphicalObjectPlugin

Unsets the variable objectRole.

unsetOccur() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Unsets the variable occur.

unsetOccur() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType

Unsets the variable occur.

unsetOffset() - Method in class org.sbml.jsbml.ext.render.GradientStop

Unsets the variable offset

unsetOffset() - Method in class org.sbml.jsbml.Unit

Deprecated.

the offset attribute should no longer be used.

unsetOperation() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

Only defined in FBC version 1.

unsetOperationType() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Unsets the variable operationType

unsetOrder() - Method in class org.sbml.jsbml.ext.layout.CompartmentGlyph

Unsets the variable order

unsetOrdinal() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

Unsets the variable ordinal

unsetOrdinal() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

Unsets the variable ordinal

unsetOrdinal() - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping

Unsets the variable ordinal

unsetOrganization() - Method in class org.sbml.jsbml.Creator

Unsets the organisation of this Creator.

unsetOriginOfText() - Method in class org.sbml.jsbml.ext.layout.TextGlyph

Unsets the origin of text

unsetOutputLevel() - Method in class org.sbml.jsbml.ext.qual.Output

unsetOutside() - Method in class org.sbml.jsbml.Compartment

Deprecated.

since Level 3 Version 1

unsetParentSBMLObject() - Method in class org.sbml.jsbml.math.AbstractASTNode

unsetParentSBMLObject() - Method in interface org.sbml.jsbml.math.ASTNode2

Unsets the parentSBMLObject to null recursively.

unsetParentSBMLObject() - Method in class org.sbml.jsbml.math.ASTUnknown

unsetPlugin(String) - Method in class org.sbml.jsbml.AbstractSBase

unsetPlugin(String) - Method in class org.sbml.jsbml.ASTNode

Unsets the ASTNodePlugin plugin object which matches this package name or URI.

unsetPlugin(String) - Method in interface org.sbml.jsbml.SBase

Unsets the SBasePlugin extension object which matches this package name or URI.

unsetPointIndex() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable pointIndex.

unsetPointIndex() - Method in class org.sbml.jsbml.ext.spatial.PolygonObject

Deprecated.

Unsets the variable pointIndex

unsetPointIndexLength() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable pointIndexLength.

unsetPolygonType() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable polygonType

unsetPortRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable portRef

unsetPosition() - Method in class org.sbml.jsbml.ext.layout.BoundingBox

Unsets the position (and fires an appropriate event)

unsetPrimitiveType() - Method in class org.sbml.jsbml.ext.spatial.CSGPrimitive

Unsets the variable primitiveType

unsetPriority() - Method in class org.sbml.jsbml.Event

Sets the Priority of this Event to null and notifies TreeNodeChangeListeners.

unsetProductComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Unsets the variable productComponent.

unsetProgramName() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable programmName

unsetProgramName() - Method in class org.sbml.jsbml.SBMLWriter

unsetProgramVersion() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable programVersion

unsetProgramVersion() - Method in class org.sbml.jsbml.SBMLWriter

unsetQualifier() - Method in class org.sbml.jsbml.CVTerm

Unsets the qualifier if it is set.

unsetQualifierType() - Method in class org.sbml.jsbml.CVTerm

Unsets the qualifier type if it is set.

unsetQualitativeSpecies() - Method in class org.sbml.jsbml.ext.qual.Input

unsetQualitativeSpecies() - Method in class org.sbml.jsbml.ext.qual.Output

unsetR() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable r

unsetRatio() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the ratio-attribute (if set)

unsetRatio() - Method in class org.sbml.jsbml.ext.render.Rectangle

unsetReactant() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Unsets the variable reactant.

unsetReactantComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Unsets the variable reactantComponent.

unsetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

Only defined in FBC version 1.

unsetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective

Unsets the variable reaction

unsetReaction() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph

unsetReaction() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

unsetReference() - Method in class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph

Unsets the reference.

unsetReferencedAttribute() - Method in class org.sbml.jsbml.ext.arrays.Index

Unsets the variable referencedAttribute

unsetReferenceRenderInformation() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable referenceRenderInformation

unsetRelation() - Method in class org.sbml.jsbml.ext.multi.SubListOfSpeciesFeature

Unsets the variable relation.

unsetRelativeValue() - Method in class org.sbml.jsbml.ext.render.RelAbsVector

Tries to unset the relative value

unsetRenderInformation() - Method in class org.sbml.jsbml.ext.render.AbstractRenderPlugin

Deprecated.

This goes beyond/is besides the render-package's specification and will be removed in a future release. Use the LocalRenderInformation-related methods of RenderLayoutPlugin, and the GlobalRenderInformation-related methods of RenderListOfLayoutsPlugin instead. Unsets the variable renderInformation

unsetReplacedBy() - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin

Unsets the variable replacedBy

unsetRepresentationType() - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin

Unsets the variable representationType.

unsetResultLevel() - Method in class org.sbml.jsbml.ext.qual.FunctionTerm

Unsets the resultLevel.

unsetReverseTransformation() - Method in class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation

Unsets the variable reverseTransformation

unsetReversible() - Method in class org.sbml.jsbml.Reaction

Sets the reversible Boolean of this Reaction to null.

unsetRole() - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph

Unsets the ReferenceGlyph.role attribute

unsetRole() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

Unsets the SpeciesReferenceGlyph.role (and fires appropriate Event)

unsetRoleList() - Method in class org.sbml.jsbml.ext.render.Style

Unsets the variable roleList

unsetRotateAngleInRadians() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAngleInRadians

unsetRotateX() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAxisX

unsetRotateY() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAxisY

unsetRotateZ() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAxisZ

unsetRx() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable rx

unsetRx() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable Rectangle.rx

unsetRy() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable ry

unsetRy() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable Rectangle.ry

unsetSampledField() - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry

Unsets the variable sampledField

unsetSampledValue() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable sampledValue

unsetSamples() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable samples.

unsetSamplesLength() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable samplesLength.

unsetSBaseListType() - Method in class org.sbml.jsbml.ListOf

Sets the SBaseListType of this ListOf to SBaseListType.none.

unsetSBaseRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable sBaseRef

unsetSBOTerm() - Method in class org.sbml.jsbml.AbstractSBase

unsetSBOTerm() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'sboTerm' attribute of this SBML object.

unsetScale() - Method in class org.sbml.jsbml.Unit

unsetScaleX() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

Unsets the variable scaleX

unsetScaleY() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

Unsets the variable scaleY

unsetScaleZ() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

Unsets the variable scaleZ

unsetSign() - Method in class org.sbml.jsbml.ext.qual.Input

unsetSize() - Method in class org.sbml.jsbml.Compartment

Unsets the value of the 'size' attribute of this Compartment.

unsetSize() - Method in class org.sbml.jsbml.ext.arrays.Dimension

Unsets the variable size

unsetSource() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

Unsets the variable source

unsetSpatialDimension() - Method in class org.sbml.jsbml.ext.spatial.DomainType

Unsets the variable spatialDimension

unsetSpatialDimensions() - Method in class org.sbml.jsbml.Compartment

Sets the spatialDimensions of this compartment to null.

unsetSpatialId() - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

unsetSpatialId() - Method in interface org.sbml.jsbml.ext.spatial.SpatialNamedSBase

Deprecated.

use SBase.unsetId()

unsetSpatialIndex() - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent

Unsets the variable spatialIndex

unsetSpatialPoints() - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry

Unsets the variable spatialPoints.

unsetSpatialRef() - Method in class org.sbml.jsbml.ext.spatial.ParameterType

Unsets the spatialRef attribute.

unsetSpatialSizeUnits() - Method in class org.sbml.jsbml.Species

Deprecated.

Only valid for SBML Level 2 Versions 1 and 2.

unsetSpecies() - Method in class org.sbml.jsbml.ext.layout.SpeciesGlyph

unsetSpeciesFeatureType() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Unsets the variable speciesFeatureType.

unsetSpeciesGlyph() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

Unsets the SpeciesReferenceGlyph.speciesGlyph

unsetSpeciesReference() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

unsetSpeciesReference() - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin

Unsets the variable speciesReference.

unsetSpeciesType() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Unsets the variable speciesType.

unsetSpeciesType() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance

Unsets the variable speciesType.

unsetSpreadMethod() - Method in class org.sbml.jsbml.ext.render.GradientBase

Unsets the variable spreadMethod

unsetStart() - Method in class org.sbml.jsbml.ext.layout.CurveSegment

Unsets the start-point of this CurveSegment

unsetStart() - Method in class org.sbml.jsbml.ext.layout.LineSegment

Unsets the start-point of this LineSegment

unsetStartHead() - Method in class org.sbml.jsbml.ext.render.RenderCurve

Unsets the variable startHead

unsetStartHead() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable startHead

unsetStoichiometry() - Method in class org.sbml.jsbml.SpeciesReference

Unsets the stoichiometry property of this element.

unsetStoichiometryMath() - Method in class org.sbml.jsbml.SpeciesReference

Deprecated.

unsetStopColor() - Method in class org.sbml.jsbml.ext.render.GradientStop

Unsets the variable stopColor

unsetStrict() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Unsets the variable strict.

unsetStroke() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

Unsets the variable stroke

unsetStrokeDashArray() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

Unsets the variable strokeDashArray

unsetStrokeWidth() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

Unsets the variable strokeWidth

unsetSubmodelRef() - Method in class org.sbml.jsbml.ext.comp.ReplacedBy

Unsets the variable submodelRef

unsetSubmodelRef() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

Unsets the variable submodelRef

unsetSubstanceUnits() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

unsetSubstanceUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.substanceUnitsID of this Model to null.

unsetSubstanceUnits() - Method in class org.sbml.jsbml.Species

Unsets the substanceUnits of this Species.

unsetText() - Method in class org.sbml.jsbml.ext.layout.TextGlyph

Unsets the TextGlyph.text attribute

unsetText() - Method in class org.sbml.jsbml.ext.render.Text

Unsets the Text.text and fires appropriate change event

unsetTextAnchor() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable textAnchor

unsetTextAnchor() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable textAnchor

unsetTextAnchor() - Method in class org.sbml.jsbml.ext.render.Text

unsetThresholdLevel() - Method in class org.sbml.jsbml.ext.qual.Input

unsetTimeConversionFactor() - Method in class org.sbml.jsbml.ext.comp.Submodel

Unsets the variable timeConversionFactor

unsetTimeUnits() - Method in class org.sbml.jsbml.Event

Sets the timeUnitsID of this Event to null.

unsetTimeUnits() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

unsetTimeUnits() - Method in class org.sbml.jsbml.Model

Sets the timeUnitsID of this Model to null.

unsetTransform() - Method in class org.sbml.jsbml.ext.render.Transformation2D

Unsets the variable transform

unsetTransitionEffect() - Method in class org.sbml.jsbml.ext.qual.Input

unsetTransitionEffect() - Method in class org.sbml.jsbml.ext.qual.Output

unsetTranslateX() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

Unsets the variable translateX

unsetTranslateY() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

Unsets the variable translateY

unsetTranslateZ() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

Unsets the variable translateZ

unsetTrigger() - Method in class org.sbml.jsbml.Event

Sets the trigger of this Event to null and notifies TreeNodeChangeListeners.

unsetType() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Unsets the variable type.

unsetType() - Method in class org.sbml.jsbml.ext.fbc.Objective

Unsets the variable type

unsetType() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

Unsets the variable type

unsetType() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable type

unsetType() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

Unsets the variable diffusionKind

unsetTypeList() - Method in class org.sbml.jsbml.ext.render.Style

Unsets the variable typeList

unsetUnit() - Method in class org.sbml.jsbml.math.compiler.ASTNode2Value

Removes the unit of this element, i.e., the unit will become invalid.

unsetUnit() - Method in class org.sbml.jsbml.util.compilers.ASTNodeValue

Removes the unit of this element, i.e., the unit will become invalid.

unsetUnitRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable unitRef

unsetUnits() - Method in class org.sbml.jsbml.AbstractNamedSBaseWithUnit

unsetUnits() - Method in class org.sbml.jsbml.ASTNode

Unset the units attribute.

unsetUnits() - Method in class org.sbml.jsbml.ExplicitRule

Deprecated.

This is a requirement for Level 1 Version 1 and Version 2, but can only be used in conjunction with Parameters. In this case this ExplicitRule represents the SBML element ParameterRule.

unsetUnits() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Unsets the variable units.

unsetUnits() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable unit

unsetUnits() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

unsetUnits() - Method in class org.sbml.jsbml.math.ASTCnNumberNode

Unset the units attribute.

unsetUnits() - Method in interface org.sbml.jsbml.SBaseWithUnit

Sets the unitsID of this SBaseWithUnit to null.

unsetUnitSize() - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping

Unsets the variable unitSize

unsetUpperFluxBound() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

Unsets the variable upperFluxBound.

unsetUseValuesFromTriggerTime() - Method in class org.sbml.jsbml.Event

Sets the useValuesFromTriggerTime of this Event to null.

unsetValue() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Unsets the variable value.

unsetValue() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

Only defined in FBC version 1.

unsetValue() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureValue

Unsets the variable value.

unsetValue() - Method in class org.sbml.jsbml.ext.render.ColorDefinition

Unsets the variable value

unsetValue() - Method in class org.sbml.jsbml.ext.spatial.Boundary

Unsets the variable value

unsetValue() - Method in interface org.sbml.jsbml.Quantity

Unsets the value of this Quantity.

unsetValue() - Method in class org.sbml.jsbml.QuantityWithUnit

unsetValue() - Method in class org.sbml.jsbml.SpeciesReference

unsetValueLower() - Method in class org.sbml.jsbml.ext.distrib.UncertSpan

Unsets the variable valueLower.

unsetValueUpper() - Method in class org.sbml.jsbml.ext.distrib.UncertSpan

Unsets the variable valueUpper.

unsetVar() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

Unsets the variable var.

unsetVariable() - Method in interface org.sbml.jsbml.Assignment

Removes the reference from this InitialAssignment to its Variable if there was any, i.e., the Variable is set to null.

unsetVariable() - Method in class org.sbml.jsbml.EventAssignment

unsetVariable() - Method in class org.sbml.jsbml.ExplicitRule

unsetVariable() - Method in class org.sbml.jsbml.ext.spatial.ParameterType

Unsets the variable attribute.

unsetVariable() - Method in class org.sbml.jsbml.InitialAssignment

unsetVarLower() - Method in class org.sbml.jsbml.ext.distrib.UncertSpan

Unsets the variable varLower.

unsetVarUpper() - Method in class org.sbml.jsbml.ext.distrib.UncertSpan

Unsets the variable varUpper.

unsetVersionMajor() - Method in class org.sbml.jsbml.ext.render.ListOfRenderInformation

Unsets the variable versionMajor

unsetVersionMinor() - Method in class org.sbml.jsbml.ext.render.ListOfRenderInformation

Unsets the variable versionMinor

unsetViableWithoutChange() - Method in class org.sbml.jsbml.ext.req.ChangedMath

Unsets the variable viableWithoutChange

unsetVolume() - Method in class org.sbml.jsbml.Compartment

Deprecated.

The volume attribute is only defined in SBML Level 1. Please use Compartment.unsetSize()

unsetVolumeUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.volumeUnitsID of this Model to null.

unsetVTextAnchor() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable VTextAnchor

unsetVTextAnchor() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable vTextAnchor

unsetVTextAnchor() - Method in class org.sbml.jsbml.ext.render.Text

unsetWidth() - Method in class org.sbml.jsbml.ext.layout.Dimensions

Unsets the required width-attribute

unsetWidth() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable width

unsetWidth() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable width

unsetX() - Method in class org.sbml.jsbml.ext.layout.Point

Unsets the required x coordinate.

unsetX() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable x

unsetX() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable x

unsetX() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable x

unsetX() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetX() - Method in class org.sbml.jsbml.ext.render.Text

unsetX1() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable x1

unsetX1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable x1

unsetX2() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable x2

unsetX2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable x2

unsetY() - Method in class org.sbml.jsbml.ext.layout.Point

Unsets the required y coordinate.

unsetY() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable y

unsetY() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable y

unsetY() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable y

unsetY() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetY() - Method in class org.sbml.jsbml.ext.render.Text

unsetY1() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable y1

unsetY1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable y1

unsetY2() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable y2

unsetY2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable y2

unsetZ() - Method in class org.sbml.jsbml.ext.layout.Point

Unsets the optional z coordinate.

unsetZ() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable z

unsetZ() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable z

unsetZ() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable z

unsetZ() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetZ() - Method in class org.sbml.jsbml.ext.render.Text

unsetZ1() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable z1

unsetZ1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable z1

unsetZ2() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable z2

unsetZ2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable z2

UnspecifiedNode<T> - Class in org.sbml.jsbml.ext.render.director

Abstract class that all the different graphical representations for unspecified entity pool nodes have to implement

UnspecifiedNode() - Constructor for class org.sbml.jsbml.ext.render.director.UnspecifiedNode

updateVariables() - Method in class org.sbml.jsbml.ASTNode

For a better performance ASTNodes can store a direct pointer to a variable element.

UPPER_BOUND - Static variable in class org.sbml.jsbml.ext.fbc.CobraConstants

upperFluxBound - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants

Introduced to FBC in version 2.

URI_AVOGADRO_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for avogadro.

URI_BIOMODELS_NET_BIOLOGY_QUALIFIERS - Static variable in class org.sbml.jsbml.CVTerm

The Uniform Resource Identifier pointing to http://biomodels.net/biology-qualifiers/

URI_BIOMODELS_NET_MODEL_QUALIFIERS - Static variable in class org.sbml.jsbml.CVTerm

The Uniform Resource Identifier pointing to http://biomodels.net/model-qualifiers/

URI_DELAY_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for delay.

URI_MATHML_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

URI for the definition of MathML.

URI_MATHML_PREFIX - Static variable in class org.sbml.jsbml.ASTNode

URI prefix for the definition of MathML, it will be used to write the sbml file

URI_NAMESPACE_L1 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 1 Version 1 and 2.

URI_NAMESPACE_L2V1 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 1.

URI_NAMESPACE_L2V2 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 2.

URI_NAMESPACE_L2V3 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 3.

URI_NAMESPACE_L2V4 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 4.

URI_NAMESPACE_L2V5 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 5.

URI_NAMESPACE_L3V1Core - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 3 Version 1.

URI_NAMESPACE_L3V2Core - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 3 Version 2.

URI_PURL_ELEMENTS - Static variable in class org.sbml.jsbml.JSBML

URI for the definition of purl elements

URI_PURL_TERMS - Static variable in class org.sbml.jsbml.JSBML

URI for purl terms.

URI_RATE_OF_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for rateOf.

URI_RDF_SYNTAX_NS - Static variable in class org.sbml.jsbml.Annotation

The RDF syntax name space definition URI.

URI_RDF_VCARD_NS - Static variable in class org.sbml.jsbml.Creator

URI for the RDF syntax name space definition for VCards.

URI_TIME_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for time.

URI_XHTML_DEFINITION - Static variable in class org.sbml.jsbml.JSBML

URI for the definition of XHTML.

usepackage(String, String...) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler

Creates a usepackage command for the given package with the optional options.

usepackage(String, String...) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler

Creates a usepackage command for the given package with the optional options.

userObject - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

userObjectKeySet() - Method in class org.sbml.jsbml.AbstractTreeNode

userObjectKeySet() - Method in class org.sbml.jsbml.math.ASTUnknown

userObjectKeySet() - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

useValuesFromTriggerTime - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

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