JSBML
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H

hasAttr(int) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an attribute with the given index exists in the attribute set in this XMLToken.
hasAttr(String) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an attribute with the given local name exists in the attribute set in this XMLToken.
hasAttr(String, String) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an attribute with the given local name and namespace URI exists in the attribute set in this XMLToken.
hasAttr(XMLTriple) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an attribute with the given XML triple exists in the attribute set in this XMLToken
hasAttribute(int) - Method in class org.sbml.jsbml.xml.XMLAttributes
Returns true or false depending on whether an attribute with the given index exists in this XMLAttributes.
hasAttribute(String) - Method in class org.sbml.jsbml.xml.XMLAttributes
Returns true or false depending on whether an attribute with the given local name exists in this XMLAttributes.
hasAttribute(String, String) - Method in class org.sbml.jsbml.xml.XMLAttributes
Returns true or false depending on whether an attribute with the given local name and namespace URI exists in this XMLAttributes.
hasAttribute(XMLTriple) - Method in class org.sbml.jsbml.xml.XMLAttributes
Returns true or false depending on whether an attribute with the given XML triple exists in this XMLAttributes.
hasCloneMarker() - Method in class org.sbml.jsbml.ext.render.director.AbstractSBGNNodeWithCloneMarker
 
hasCloneMarker() - Method in interface org.sbml.jsbml.ext.render.director.SBGNNodeWithCloneMarker
 
hasCorrectUnits(ValidationContext, KineticLaw) - Static method in class org.sbml.jsbml.validator.offline.constraints.helper.ValidationTools
Returns true if the given KineticLaw has correct derived units.
hasExtension(String) - Method in class org.sbml.jsbml.AbstractSBase
 
hasExtension(String) - Method in interface org.sbml.jsbml.SBase
Returns true if the given extension exists in this SBase instance.
hashCode() - Method in class org.sbml.jsbml.AbstractNamedSBaseWithUnit
 
hashCode() - Method in class org.sbml.jsbml.AbstractSBase
 
hashCode() - Method in class org.sbml.jsbml.AbstractTreeNode
 
hashCode() - Method in class org.sbml.jsbml.Annotation
 
hashCode() - Method in class org.sbml.jsbml.ASTNode
 
hashCode() - Method in class org.sbml.jsbml.Compartment
 
hashCode() - Method in class org.sbml.jsbml.Creator
 
hashCode() - Method in class org.sbml.jsbml.CVTerm
 
hashCode() - Method in class org.sbml.jsbml.Event
 
hashCode() - Method in class org.sbml.jsbml.EventAssignment
 
hashCode() - Method in class org.sbml.jsbml.ExplicitRule
 
hashCode() - Method in class org.sbml.jsbml.ext.AbstractASTNodePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.AbstractSBasePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.arrays.Dimension
 
hashCode() - Method in class org.sbml.jsbml.ext.arrays.Index
 
hashCode() - Method in interface org.sbml.jsbml.ext.ASTNodePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.AbstractNamedSBaseRef
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.ReplacedBy
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.SBaseRef
 
hashCode() - Method in class org.sbml.jsbml.ext.comp.Submodel
 
hashCode() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter
 
hashCode() - Method in class org.sbml.jsbml.ext.distrib.UncertSpan
 
hashCode() - Method in class org.sbml.jsbml.ext.dyn.DynCompartmentPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.dyn.DynElement
 
hashCode() - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.dyn.DynSBasePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Deprecated.
hashCode() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.GeneProduct
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.GeneProductRef
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.Objective
 
hashCode() - Method in class org.sbml.jsbml.ext.groups.Group
 
hashCode() - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint
Deprecated.
 
hashCode() - Method in class org.sbml.jsbml.ext.groups.ListOfMembers
 
hashCode() - Method in class org.sbml.jsbml.ext.groups.Member
 
hashCode() - Method in class org.sbml.jsbml.ext.groups.MemberConstraint
Deprecated.
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.BoundingBox
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.CubicBezier
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.Curve
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.CurveSegment
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.Dimensions
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.GraphicalObject
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.Layout
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.LayoutModelPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.LineSegment
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.Point
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph
 
hashCode() - Method in class org.sbml.jsbml.ext.layout.TextGlyph
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.CompartmentReference
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.MultiSimpleSpeciesReferencePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesReferencePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.PossibleSpeciesFeatureValue
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureValue
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance
 
hashCode() - Method in class org.sbml.jsbml.ext.multi.SubListOfSpeciesFeature
 
hashCode() - Method in class org.sbml.jsbml.ext.qual.FunctionTerm
 
hashCode() - Method in class org.sbml.jsbml.ext.qual.Input
 
hashCode() - Method in class org.sbml.jsbml.ext.qual.Output
 
hashCode() - Method in class org.sbml.jsbml.ext.qual.QualConstants
 
hashCode() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies
 
hashCode() - Method in class org.sbml.jsbml.ext.qual.Transition
 
hashCode() - Method in class org.sbml.jsbml.ext.render.ColorDefinition
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Ellipse
 
hashCode() - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation
 
hashCode() - Method in class org.sbml.jsbml.ext.render.GradientBase
 
hashCode() - Method in class org.sbml.jsbml.ext.render.GradientStop
 
hashCode() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D
 
hashCode() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Image
 
hashCode() - Method in class org.sbml.jsbml.ext.render.LinearGradient
 
hashCode() - Method in class org.sbml.jsbml.ext.render.LineEnding
 
hashCode() - Method in class org.sbml.jsbml.ext.render.ListOfRenderInformation
 
hashCode() - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation
 
hashCode() - Method in class org.sbml.jsbml.ext.render.LocalStyle
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Polygon
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RadialGradient
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Rectangle
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RelAbsVector
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderCurve
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderCurveSegment
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderGraphicalObjectPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderGroup
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
 
hashCode() - Method in class org.sbml.jsbml.ext.render.RenderPoint
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Style
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Text
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Transformation
 
hashCode() - Method in class org.sbml.jsbml.ext.render.Transformation2D
 
hashCode() - Method in interface org.sbml.jsbml.ext.SBasePlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.AdvectionCoefficient
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.Boundary
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CoordinateReference
Deprecated.
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGeometry
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGObject
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGPrimitive
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGScale
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.Domain
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.DomainType
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.Geometry
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.GeometryDefinition
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.ParameterType
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.PolygonObject
Deprecated.
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SampledField
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.SpatialSpeciesPlugin
 
hashCode() - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent
 
hashCode() - Method in class org.sbml.jsbml.History
 
hashCode() - Method in class org.sbml.jsbml.InitialAssignment
 
hashCode() - Method in class org.sbml.jsbml.KineticLaw
 
hashCode() - Method in class org.sbml.jsbml.LocalParameter
 
hashCode() - Method in class org.sbml.jsbml.math.AbstractASTNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCiFunctionNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCiNumberNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCnNumberNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCnRealNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCSymbolAvogadroNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCSymbolDelayNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTCSymbolTimeNode
 
hashCode() - Method in class org.sbml.jsbml.math.ASTFunction
 
hashCode() - Method in class org.sbml.jsbml.Model
 
hashCode() - Method in class org.sbml.jsbml.QuantityWithUnit
 
hashCode() - Method in class org.sbml.jsbml.Reaction
 
hashCode() - Method in interface org.sbml.jsbml.SBase
Returns a hash code value for this SBase instance.
hashCode() - Method in class org.sbml.jsbml.SBMLDocument
 
hashCode() - Method in class org.sbml.jsbml.SimpleSpeciesReference
 
hashCode() - Method in class org.sbml.jsbml.Species
 
hashCode() - Method in class org.sbml.jsbml.SpeciesReference
 
hashCode() - Method in class org.sbml.jsbml.Symbol
 
hashCode() - Method in class org.sbml.jsbml.Trigger
 
hashCode() - Method in class org.sbml.jsbml.Unit
 
hashCode() - Method in class org.sbml.jsbml.util.Pair
 
hashCode() - Method in class org.sbml.jsbml.util.TreeNodeAdapter
 
hashCode() - Method in class org.sbml.jsbml.util.TreeNodeChangeEvent
 
hashCode() - Method in class org.sbml.jsbml.xml.XMLAttributes
Returns a hashcode for this XMLAttributes object.
hashCode() - Method in class org.sbml.jsbml.xml.XMLNamespaces
Returns a hashcode for this XMLNamespaces object.
hashCode() - Method in class org.sbml.jsbml.xml.XMLToken
 
hashCode() - Method in class org.sbml.jsbml.xml.XMLTriple
Returns a hashcode for this XMLTriple object.
hasModifier(Species) - Method in class org.sbml.jsbml.Reaction
 
hasNamespaceNS(String, String) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an XML Namespace with the given uri/prefix pair is contained in the XMLNamespaces of this XMLToken.
hasNamespacePrefix(String) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an XML Namespace with the given prefix is contained in the XMLNamespaces of this XMLToken.
hasNamespaceURI(String) - Method in class org.sbml.jsbml.xml.XMLToken
Returns true or false depending on whether an XML Namespace with the given URI is contained in the XMLNamespaces of this XMLToken.
hasNS(String, String) - Method in class org.sbml.jsbml.xml.XMLNamespaces
Returns true or false depending on whether an XML Namespace with the given URI and prefix pair is contained in this XMLNamespaces list.
HasOnlySubsNoSpatialUnits - org.sbml.jsbml.SBMLException.Code
No spatialSizeUnits permitted if hasOnlySubstanceUnits=true
hasOnlySubstanceUnits - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
 
hasOnlySubstanceUnits() - Method in class org.sbml.jsbml.Species
Returns the 'hasOnlySubstanceUnits' for this Species.
HasOnlySubsUnitsNotValidAttribute - org.sbml.jsbml.SBMLException.Code
Attribute hasOnlySubstanceUnits on species not supported in SBML Level 1
hasOtherwise() - Method in class org.sbml.jsbml.math.ASTPiecewiseFunctionNode
Returns True iff piecewise element contains an otherwise element
hasPrefix(String) - Method in class org.sbml.jsbml.xml.XMLNamespaces
Returns true or false depending on whether an XML Namespace with the given prefix is contained in this XMLNamespaces list.
hasProduct(Species) - Method in class org.sbml.jsbml.Reaction
 
hasReactant(Species) - Method in class org.sbml.jsbml.Reaction
 
hasRequiredAttributes() - Method in class org.sbml.jsbml.Unit
Predicate returning true or false depending on whether all the required attributes for this Unit object have been set.
hasTerm(int) - Method in class org.sbml.jsbml.SBO
This method will test if a term for the given SBO code number exists and returns true if this is the case.
hasTerm(String) - Method in class org.sbml.jsbml.SBO
This method will test if a term for the given SBO code number exists and returns true if this is the case.
hasUnit(String) - Method in class org.sbml.jsbml.Model
Returns true if this model has a reference to the UnitDefinition with the given identifier.
hasUnits() - Method in class org.sbml.jsbml.ASTNode
Returns true if the current ASTNode or any of his descendant has a unit defined.
hasUnits() - Method in class org.sbml.jsbml.math.ASTCnNumberNode
Returns true if the current ASTCnNumberNode or any of its descendants has a unit defined.
hasUnits() - Method in class org.sbml.jsbml.math.ASTFunction
Returns true if any one of the descendants of this ASTFunction has a unit defined.
hasURI(String) - Method in class org.sbml.jsbml.xml.XMLNamespaces
Returns true or false depending on whether an XML Namespace with the given URI is contained in this XMLNamespaces list.
hasValidAnnotation() - Method in class org.sbml.jsbml.AbstractSBase
 
hasValidAnnotation() - Method in interface org.sbml.jsbml.SBase
Returns true if the Annotation RDF 'about' attribute matches the metaid of this object.
hasValidLevelVersionNamespaceCombination() - Method in class org.sbml.jsbml.AbstractSBase
 
hasValidLevelVersionNamespaceCombination() - Method in interface org.sbml.jsbml.SBase
Returns true or false depending on whether this object's level/version and namespace values correspond to a valid SBML specification.
haveEquivalentUnits(ValidationContext, Assignment, Variable) - Static method in class org.sbml.jsbml.validator.offline.constraints.helper.ValidationTools
Returns true if the given Assignment and Variable have equivalent derived units.
height - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
 
height - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
 
HENRY - org.sbml.jsbml.Unit.Kind
The henry unit.
HERTZ - org.sbml.jsbml.Unit.Kind
The hertz unit.
history - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
 
History - Class in org.sbml.jsbml
Contains all the history information about a Model (or other SBase if level >= 3).
History() - Constructor for class org.sbml.jsbml.History
Creates a History instance.
History(History) - Constructor for class org.sbml.jsbml.History
Creates a History instance from a given History.
HOUR - Static variable in class org.sbml.jsbml.util.ModelBuilder
Default time unit in constraint-based modeling (CBM), 3,600 seconds.
href - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
 
href(String, Object) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
Creates a hyper link to the given target and the text to be visible in the document.
href(String, Object) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
Creates a hyper link to the given target and the text to be visible in the document.
HTextAnchor - Enum in org.sbml.jsbml.ext.render
The enumeration HTextAnchor defines the horizontal alignment of text elements.
HTMLFormula - Class in org.sbml.jsbml.math.compiler
 
HTMLFormula - Class in org.sbml.jsbml.util.compilers
 
HTMLFormula() - Constructor for class org.sbml.jsbml.util.compilers.HTMLFormula
 
HTMLFormula(XMLStreamWriter, String) - Constructor for class org.sbml.jsbml.math.compiler.HTMLFormula
 
hyperref(String, Object) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
 
hyperref(String, Object) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
 
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Generated at January 5 2022
Version 1.6.1-SNAPSHOT Revision ed2d2b5c6574a3d1769c1e26e09e14e700d571fa