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Hierarchy For All Packages
Package Hierarchies:
org.sbml.jsbml
,
org.sbml.jsbml.ext
,
org.sbml.jsbml.ext.arrays
,
org.sbml.jsbml.ext.arrays.compiler
,
org.sbml.jsbml.ext.arrays.flattening
,
org.sbml.jsbml.ext.arrays.util
,
org.sbml.jsbml.ext.arrays.validator
,
org.sbml.jsbml.ext.arrays.validator.constraints
,
org.sbml.jsbml.ext.comp
,
org.sbml.jsbml.ext.comp.util
,
org.sbml.jsbml.ext.distrib
,
org.sbml.jsbml.ext.distrib.util
,
org.sbml.jsbml.ext.dyn
,
org.sbml.jsbml.ext.fbc
,
org.sbml.jsbml.ext.fbc.converters
,
org.sbml.jsbml.ext.groups
,
org.sbml.jsbml.ext.layout
,
org.sbml.jsbml.ext.multi
,
org.sbml.jsbml.ext.multi.util
,
org.sbml.jsbml.ext.qual
,
org.sbml.jsbml.ext.render
,
org.sbml.jsbml.ext.render.director
,
org.sbml.jsbml.ext.req
,
org.sbml.jsbml.ext.spatial
,
org.sbml.jsbml.math
,
org.sbml.jsbml.math.compiler
,
org.sbml.jsbml.math.parser
,
org.sbml.jsbml.ontology
,
org.sbml.jsbml.resources
,
org.sbml.jsbml.text.parser
,
org.sbml.jsbml.util
,
org.sbml.jsbml.util.compilers
,
org.sbml.jsbml.util.converters
,
org.sbml.jsbml.util.filters
,
org.sbml.jsbml.validator
,
org.sbml.jsbml.validator.offline
,
org.sbml.jsbml.validator.offline.constraints
,
org.sbml.jsbml.validator.offline.constraints.helper
,
org.sbml.jsbml.validator.offline.factory
,
org.sbml.jsbml.validator.offline.i18n
,
org.sbml.jsbml.validator.offline.i18n.fr
,
org.sbml.jsbml.xml
,
org.sbml.jsbml.xml.parsers
,
org.sbml.jsbml.xml.stax
,
org.sbml.jsbml.xml.xstream.converter
Class Hierarchy
java.lang.Object
org.sbml.jsbml.validator.offline.constraints.
AbstractConstraint
<T> (implements org.sbml.jsbml.validator.offline.constraints.
AnyConstraint
<T>)
org.sbml.jsbml.validator.offline.constraints.
ConstraintGroup
<T>
org.sbml.jsbml.validator.offline.constraints.
CategoryConstraintGroup
<T>
org.sbml.jsbml.validator.offline.constraints.
ValidationConstraint
<T>
org.sbml.jsbml.validator.offline.constraints.
AbstractConstraintDeclaration
(implements org.sbml.jsbml.validator.offline.constraints.
ConstraintDeclaration
, org.sbml.jsbml.validator.offline.factory.
SBMLErrorCodes
)
org.sbml.jsbml.validator.offline.constraints.
AdjacentDomainsConstraints
org.sbml.jsbml.validator.offline.constraints.
AdvectionCoefficientConstraints
org.sbml.jsbml.validator.offline.constraints.
AlgebraicRuleConstraints
org.sbml.jsbml.validator.offline.constraints.
AnalyticGeometryConstraints
org.sbml.jsbml.validator.offline.constraints.
AnalyticVolumeConstraints
org.sbml.jsbml.validator.offline.constraints.
AndConstraints
org.sbml.jsbml.validator.offline.constraints.
ArraysSBasePluginConstraints
org.sbml.jsbml.validator.offline.constraints.
AssignmentConstraints
org.sbml.jsbml.validator.offline.constraints.
AssignmentRuleConstraints
org.sbml.jsbml.validator.offline.constraints.
ASTNodeConstraints
org.sbml.jsbml.validator.offline.constraints.
BindingSiteSpeciesTypeConstraints
org.sbml.jsbml.validator.offline.constraints.
BoundaryConditionConstraints
org.sbml.jsbml.validator.offline.constraints.
BoundaryConstraints
org.sbml.jsbml.validator.offline.constraints.
BoundingBoxConstraints
org.sbml.jsbml.validator.offline.constraints.
ColorDefinitionConstraints
org.sbml.jsbml.validator.offline.constraints.
CompartmentConstraints
org.sbml.jsbml.validator.offline.constraints.
CompartmentGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
CompartmentMappingConstraints
org.sbml.jsbml.validator.offline.constraints.
CompartmentReferenceConstraints
org.sbml.jsbml.validator.offline.constraints.
CompartmentTypeConstraints
org.sbml.jsbml.validator.offline.constraints.
CompModelPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
CompSBasePluginConstraints
org.sbml.jsbml.validator.offline.constraints.
CompSBMLDocumentPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
ConstraintConstraints
org.sbml.jsbml.validator.offline.constraints.
CoordinateComponentConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGeometryConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGHomogeneousTransformationConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGObjectConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGPrimitiveConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGRotationConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGScaleConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGSetOperatorConstraints
org.sbml.jsbml.validator.offline.constraints.
CSGTranslationConstraints
org.sbml.jsbml.validator.offline.constraints.
CubicBezierConstraints
org.sbml.jsbml.validator.offline.constraints.
CurveConstraints
org.sbml.jsbml.validator.offline.constraints.
DefaultValuesConstraints
org.sbml.jsbml.validator.offline.constraints.
DelayConstraints
org.sbml.jsbml.validator.offline.constraints.
DeletionConstraints
org.sbml.jsbml.validator.offline.constraints.
DiffusionCoefficientConstraints
org.sbml.jsbml.validator.offline.constraints.
DimensionConstraints
org.sbml.jsbml.validator.offline.constraints.
DimensionsConstraints
org.sbml.jsbml.validator.offline.constraints.
DomainConstraints
org.sbml.jsbml.validator.offline.constraints.
DomainTypeConstraints
org.sbml.jsbml.validator.offline.constraints.
EllipseConstraints
org.sbml.jsbml.validator.offline.constraints.
EventAssignmentConstraints
org.sbml.jsbml.validator.offline.constraints.
EventConstraints
org.sbml.jsbml.validator.offline.constraints.
ExplicitRuleConstraints
org.sbml.jsbml.validator.offline.constraints.
ExternalModelDefinitionConstraints
org.sbml.jsbml.validator.offline.constraints.
FBCReactionPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
FunctionDefinitionConstraints
org.sbml.jsbml.validator.offline.constraints.
FunctionTermConstraints
org.sbml.jsbml.validator.offline.constraints.
GeneProductConstraints
org.sbml.jsbml.validator.offline.constraints.
GeneralGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
GeometryConstraints
org.sbml.jsbml.validator.offline.constraints.
GeometryDefinitionConstraints
org.sbml.jsbml.validator.offline.constraints.
GlobalRenderInformationConstraints
org.sbml.jsbml.validator.offline.constraints.
GradientBaseConstraints
org.sbml.jsbml.validator.offline.constraints.
GradientStopConstraints
org.sbml.jsbml.validator.offline.constraints.
GraphicalObjectConstraints
org.sbml.jsbml.validator.offline.constraints.
GraphicalPrimitive1DConstraints
org.sbml.jsbml.validator.offline.constraints.
GraphicalPrimitive2DConstraints
org.sbml.jsbml.validator.offline.constraints.
ImageConstraints
org.sbml.jsbml.validator.offline.constraints.
IndexConstraints
org.sbml.jsbml.validator.offline.constraints.
InitialAssignmentConstraints
org.sbml.jsbml.validator.offline.constraints.
InputConstraints
org.sbml.jsbml.validator.offline.constraints.
InSpeciesTypeBondConstraints
org.sbml.jsbml.validator.offline.constraints.
InteriorPointConstraints
org.sbml.jsbml.validator.offline.constraints.
KineticLawConstraints
org.sbml.jsbml.validator.offline.constraints.
LayoutConstraints
org.sbml.jsbml.validator.offline.constraints.
LayoutModelPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
LinearGradientConstraints
org.sbml.jsbml.validator.offline.constraints.
LineEndingConstraints
org.sbml.jsbml.validator.offline.constraints.
LineSegmentConstraints
org.sbml.jsbml.validator.offline.constraints.
LocalParameterConstraints
org.sbml.jsbml.validator.offline.constraints.
LocalRenderInformationConstraints
org.sbml.jsbml.validator.offline.constraints.
LocalStyleConstraints
org.sbml.jsbml.validator.offline.constraints.
MathContainerConstraints
org.sbml.jsbml.validator.offline.constraints.
MixedGeometryConstraints
org.sbml.jsbml.validator.offline.constraints.
ModelConstraints
org.sbml.jsbml.validator.offline.constraints.
MultiCompartmentPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
MultiModelPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
MultiSpeciesTypeConstraints
org.sbml.jsbml.validator.offline.constraints.
ObjectiveConstraints
org.sbml.jsbml.validator.offline.constraints.
OrConstraints
org.sbml.jsbml.validator.offline.constraints.
OrdinalMappingConstraints
org.sbml.jsbml.validator.offline.constraints.
OutputConstraints
org.sbml.jsbml.validator.offline.constraints.
ParameterConstraints
org.sbml.jsbml.validator.offline.constraints.
ParametricGeometryConstraints
org.sbml.jsbml.validator.offline.constraints.
ParametricObjectConstraints
org.sbml.jsbml.validator.offline.constraints.
PointConstraints
org.sbml.jsbml.validator.offline.constraints.
PolygonConstraints
org.sbml.jsbml.validator.offline.constraints.
PortConstraints
org.sbml.jsbml.validator.offline.constraints.
PossibleSpeciesFeatureValueConstraints
org.sbml.jsbml.validator.offline.constraints.
PriorityConstraints
org.sbml.jsbml.validator.offline.constraints.
QualitativeSpeciesConstraints
org.sbml.jsbml.validator.offline.constraints.
QualModelPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
RadialGradientConstraints
org.sbml.jsbml.validator.offline.constraints.
RateRuleConstraints
org.sbml.jsbml.validator.offline.constraints.
ReactionConstraints
org.sbml.jsbml.validator.offline.constraints.
ReactionGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
RectangleConstraints
org.sbml.jsbml.validator.offline.constraints.
ReferenceGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderCubicBezierConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderCurveConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderGraphicalObjectPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderGroupConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderInformationBaseConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderLayoutPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderListOfLayoutsPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
RenderPointConstraints
org.sbml.jsbml.validator.offline.constraints.
ReplacedByConstraints
org.sbml.jsbml.validator.offline.constraints.
ReplacedElementConstraints
org.sbml.jsbml.validator.offline.constraints.
RuleConstraints
org.sbml.jsbml.validator.offline.constraints.
SampledFieldConstraints
org.sbml.jsbml.validator.offline.constraints.
SampledFieldGeometryConstraints
org.sbml.jsbml.validator.offline.constraints.
SampledVolumeConstraints
org.sbml.jsbml.validator.offline.constraints.
SBaseConstraints
org.sbml.jsbml.validator.offline.constraints.
SBaseRefConstraints
org.sbml.jsbml.validator.offline.constraints.
SBaseWithDerivedUnitConstraints
org.sbml.jsbml.validator.offline.constraints.
SBaseWithUnitConstraints
org.sbml.jsbml.validator.offline.constraints.
SBMLDocumentConstraints
org.sbml.jsbml.validator.offline.constraints.
SimpleSpeciesReferenceConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialCompartmentPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialModelPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialParameterPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialPointsConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialReactionPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialSpeciesPluginConstraints
org.sbml.jsbml.validator.offline.constraints.
SpatialSymbolReferenceConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesFeatureTypeConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesReferenceConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesReferenceGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesTypeComponentIndexConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesTypeConstraints
org.sbml.jsbml.validator.offline.constraints.
SpeciesTypeInstanceConstraints
org.sbml.jsbml.validator.offline.constraints.
StyleConstraints
org.sbml.jsbml.validator.offline.constraints.
SubmodelConstraints
org.sbml.jsbml.validator.offline.constraints.
TextConstraints
org.sbml.jsbml.validator.offline.constraints.
TextGlyphConstraints
org.sbml.jsbml.validator.offline.constraints.
Transformation2DConstraints
org.sbml.jsbml.validator.offline.constraints.
TransformationComponentConstraints
org.sbml.jsbml.validator.offline.constraints.
TransformationConstraints
org.sbml.jsbml.validator.offline.constraints.
TransitionConstraints
org.sbml.jsbml.validator.offline.constraints.
TreeNodeConstraints
(implements org.sbml.jsbml.validator.offline.constraints.
CoreSpecialErrorCodes
)
org.sbml.jsbml.validator.offline.constraints.
TriggerConstraints
org.sbml.jsbml.validator.offline.constraints.
UnitConstraints
org.sbml.jsbml.validator.offline.constraints.
UnitDefinitionConstraints
org.sbml.jsbml.ext.render.director.
AbstractLayoutBuilder
<P,NodeT,ArcT> (implements org.sbml.jsbml.ext.render.director.
LayoutBuilder
<P>, org.sbml.jsbml.ext.render.director.
LayoutFactory
<NodeT,ArcT>)
org.sbml.jsbml.xml.parsers.
AbstractReaderWriter
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.xml.parsers.
ArraysParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
CompParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
DistribParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
DynParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
FBCParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
GroupsParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
L3LayoutParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
MultiParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
QualParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
RenderParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
ReqParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
SpatialParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.ext.render.director.
AbstractSBGNnode
<T> (implements org.sbml.jsbml.ext.render.director.
SBGNNode
<T>)
org.sbml.jsbml.ext.render.director.
AbstractSBGNNodeWithCloneMarker
<T> (implements org.sbml.jsbml.ext.render.director.
SBGNNodeWithCloneMarker
<T>)
org.sbml.jsbml.ext.render.director.
Macromolecule
<T>
org.sbml.jsbml.ext.render.director.
NucleicAcidFeature
<T>
org.sbml.jsbml.ext.render.director.
PerturbingAgent
<T>
org.sbml.jsbml.ext.render.director.
SimpleChemical
<T>
org.sbml.jsbml.ext.render.director.
UnspecifiedNode
<T>
org.sbml.jsbml.ext.render.director.
AbstractSBGNProcessNode
<T> (implements org.sbml.jsbml.ext.render.director.
SBGNProcessNode
<T>)
org.sbml.jsbml.ext.render.director.
Compartment
<T>
org.sbml.jsbml.ext.render.director.
SourceSink
<T>
org.sbml.jsbml.
AbstractTreeNode
(implements org.sbml.jsbml.util.
TreeNodeWithChangeSupport
)
org.sbml.jsbml.math.
AbstractASTNode
(implements org.sbml.jsbml.math.
ASTNode2
)
org.sbml.jsbml.math.
ASTBoolean
org.sbml.jsbml.math.
ASTFunction
org.sbml.jsbml.math.
ASTArithmeticOperatorNode
org.sbml.jsbml.math.
ASTBinaryFunctionNode
org.sbml.jsbml.math.
ASTCSymbolDelayNode
(implements org.sbml.jsbml.math.
ASTCSymbolNode
)
org.sbml.jsbml.math.
ASTDivideNode
org.sbml.jsbml.math.
ASTLogarithmNode
org.sbml.jsbml.math.
ASTMinusNode
org.sbml.jsbml.math.
ASTPlusNode
org.sbml.jsbml.math.
ASTPowerNode
org.sbml.jsbml.math.
ASTRootNode
org.sbml.jsbml.math.
ASTTimesNode
org.sbml.jsbml.math.
ASTCiFunctionNode
(implements org.sbml.jsbml.math.
ASTCSymbolBaseNode
)
org.sbml.jsbml.math.
ASTLambdaFunctionNode
org.sbml.jsbml.math.
ASTLogicalOperatorNode
org.sbml.jsbml.math.
ASTPiecewiseFunctionNode
org.sbml.jsbml.math.
ASTQualifierNode
org.sbml.jsbml.math.
ASTRelationalOperatorNode
org.sbml.jsbml.math.
ASTUnaryFunctionNode
org.sbml.jsbml.math.
ASTHyperbolicNode
org.sbml.jsbml.math.
ASTTrigonometricNode
org.sbml.jsbml.math.
ASTNumber
org.sbml.jsbml.math.
ASTCiNumberNode
(implements org.sbml.jsbml.math.
ASTCSymbolBaseNode
)
org.sbml.jsbml.math.
ASTCnNumberNode
<T>
org.sbml.jsbml.math.
ASTCnExponentialNode
org.sbml.jsbml.math.
ASTCnIntegerNode
org.sbml.jsbml.math.
ASTCnRationalNode
org.sbml.jsbml.math.
ASTCnRealNode
org.sbml.jsbml.math.
ASTConstantNumber
org.sbml.jsbml.math.
ASTCSymbolAvogadroNode
(implements org.sbml.jsbml.math.
ASTCSymbolNode
)
org.sbml.jsbml.math.
ASTCSymbolTimeNode
(implements org.sbml.jsbml.math.
ASTCSymbolNode
)
org.sbml.jsbml.ext.
AbstractASTNodePlugin
(implements org.sbml.jsbml.ext.
ASTNodePlugin
)
org.sbml.jsbml.ext.multi.
MultiASTNodePlugin
org.sbml.jsbml.
AbstractSBase
(implements org.sbml.jsbml.
SBase
)
org.sbml.jsbml.ext.distrib.
AbstractDistribSBase
(implements org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.ext.distrib.
Uncertainty
org.sbml.jsbml.ext.distrib.
UncertParameter
(implements org.sbml.jsbml.
MathContainer
)
org.sbml.jsbml.ext.distrib.
UncertSpan
org.sbml.jsbml.
AbstractMathContainer
(implements org.sbml.jsbml.
MathContainer
)
org.sbml.jsbml.ext.spatial.
AnalyticVolume
(implements org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Constraint
(implements org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
Delay
(implements org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
EventAssignment
(implements org.sbml.jsbml.
Assignment
)
org.sbml.jsbml.
FunctionDefinition
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
FunctionTerm
org.sbml.jsbml.ext.arrays.
Index
org.sbml.jsbml.
InitialAssignment
(implements org.sbml.jsbml.
Assignment
)
org.sbml.jsbml.
KineticLaw
(implements org.sbml.jsbml.util.
IdManager
, org.sbml.jsbml.
SBaseWithUnit
, org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
Priority
(implements org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
Rule
(implements org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
AlgebraicRule
org.sbml.jsbml.
ExplicitRule
(implements org.sbml.jsbml.
Assignment
, org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.
AssignmentRule
org.sbml.jsbml.
RateRule
org.sbml.jsbml.
StoichiometryMath
org.sbml.jsbml.
Trigger
(implements org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
AbstractNamedSBase
(implements org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
AbstractNamedSBaseWithUnit
(implements org.sbml.jsbml.
NamedSBaseWithDerivedUnit
, org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.
Event
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
QuantityWithUnit
(implements org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
LocalParameter
org.sbml.jsbml.
Symbol
(implements org.sbml.jsbml.
Variable
)
org.sbml.jsbml.
Compartment
org.sbml.jsbml.
Parameter
org.sbml.jsbml.
Species
(implements org.sbml.jsbml.
CompartmentalizedSBase
)
org.sbml.jsbml.ext.layout.
BoundingBox
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.req.
ChangedMath
org.sbml.jsbml.ext.render.
ColorDefinition
org.sbml.jsbml.ext.multi.
CompartmentReference
(implements org.sbml.jsbml.
CompartmentalizedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
CompartmentType
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.arrays.
Dimension
(implements org.sbml.jsbml.
CallableSBase
)
org.sbml.jsbml.ext.layout.
Dimensions
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.dyn.
DynElement
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.comp.
ExternalModelDefinition
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
FluxBound
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
FluxObjective
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
GeneProduct
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
GeneProductAssociation
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
GeneProductRef
(implements org.sbml.jsbml.ext.fbc.
Association
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
GradientBase
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
LinearGradient
org.sbml.jsbml.ext.render.
RadialGradient
org.sbml.jsbml.ext.layout.
GraphicalObject
(implements org.sbml.jsbml.ext.layout.
IBoundingBox
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.layout.
AbstractReferenceGlyph
org.sbml.jsbml.ext.layout.
CompartmentGlyph
(implements org.sbml.jsbml.
CompartmentalizedSBase
)
org.sbml.jsbml.ext.layout.
GeneralGlyph
org.sbml.jsbml.ext.layout.
ReactionGlyph
org.sbml.jsbml.ext.layout.
ReferenceGlyph
org.sbml.jsbml.ext.layout.
SpeciesGlyph
org.sbml.jsbml.ext.layout.
SpeciesReferenceGlyph
org.sbml.jsbml.ext.layout.
TextGlyph
org.sbml.jsbml.ext.groups.
Group
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
Input
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
InSpeciesTypeBond
org.sbml.jsbml.ext.layout.
Layout
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.groups.
Member
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.groups.
MemberConstraint
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Model
(implements org.sbml.jsbml.util.
IdManager
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.comp.
ModelDefinition
org.sbml.jsbml.ext.fbc.
Objective
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
Output
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.layout.
Point
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
PossibleSpeciesFeatureValue
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
QualitativeSpecies
(implements org.sbml.jsbml.
CompartmentalizedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Reaction
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
CompartmentalizedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
IntraSpeciesReaction
org.sbml.jsbml.ext.render.
RenderInformationBase
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
GlobalRenderInformation
org.sbml.jsbml.ext.render.
LocalRenderInformation
org.sbml.jsbml.
SimpleSpeciesReference
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
ModifierSpeciesReference
org.sbml.jsbml.
SpeciesReference
(implements org.sbml.jsbml.
Variable
)
org.sbml.jsbml.ext.dyn.
SpatialComponent
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
SpeciesFeature
(implements org.sbml.jsbml.ext.multi.util.
ListOfSpeciesFeatureContent
)
org.sbml.jsbml.ext.multi.
SpeciesFeatureType
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SpeciesType
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
MultiSpeciesType
(implements org.sbml.jsbml.
CompartmentalizedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
BindingSiteSpeciesType
org.sbml.jsbml.ext.multi.
SpeciesTypeComponentIndex
org.sbml.jsbml.ext.multi.
SpeciesTypeInstance
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
Style
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
LocalStyle
org.sbml.jsbml.ext.comp.
Submodel
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
Transition
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UnitDefinition
org.sbml.jsbml.ext.spatial.
AbstractSpatialNamedSBase
(implements org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
)
org.sbml.jsbml.ext.spatial.
AdjacentDomains
org.sbml.jsbml.ext.spatial.
Boundary
org.sbml.jsbml.ext.spatial.
CompartmentMapping
org.sbml.jsbml.ext.spatial.
CoordinateComponent
(implements org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.ext.spatial.
CSGNode
org.sbml.jsbml.ext.spatial.
CSGPrimitive
org.sbml.jsbml.ext.spatial.
CSGPseudoPrimitive
org.sbml.jsbml.ext.spatial.
CSGSetOperator
org.sbml.jsbml.ext.spatial.
CSGTransformation
org.sbml.jsbml.ext.spatial.
CSGHomogeneousTransformation
org.sbml.jsbml.ext.spatial.
CSGRotation
org.sbml.jsbml.ext.spatial.
CSGScale
org.sbml.jsbml.ext.spatial.
CSGTranslation
org.sbml.jsbml.ext.spatial.
CSGObject
org.sbml.jsbml.ext.spatial.
Domain
org.sbml.jsbml.ext.spatial.
DomainType
org.sbml.jsbml.ext.spatial.
Geometry
org.sbml.jsbml.ext.spatial.
GeometryDefinition
org.sbml.jsbml.ext.spatial.
AnalyticGeometry
org.sbml.jsbml.ext.spatial.
CSGeometry
org.sbml.jsbml.ext.spatial.
MixedGeometry
org.sbml.jsbml.ext.spatial.
ParametricGeometry
org.sbml.jsbml.ext.spatial.
SampledFieldGeometry
org.sbml.jsbml.ext.spatial.
ParametricObject
org.sbml.jsbml.ext.spatial.
SampledField
org.sbml.jsbml.ext.spatial.
SampledVolume
org.sbml.jsbml.ext.spatial.
SpatialPoints
org.sbml.jsbml.ext.spatial.
CoordinateReference
org.sbml.jsbml.ext.layout.
Curve
(implements org.sbml.jsbml.ext.layout.
ICurve
)
org.sbml.jsbml.ext.layout.
CurveSegment
org.sbml.jsbml.ext.layout.
LineSegment
org.sbml.jsbml.ext.layout.
CubicBezier
org.sbml.jsbml.ext.render.
DefaultValues
org.sbml.jsbml.ext.render.
GradientStop
org.sbml.jsbml.ext.spatial.
InteriorPoint
org.sbml.jsbml.
ListOf
<T> (implements java.util.List<E>, org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.ext.groups.
ListOfMemberConstraint
(implements org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.groups.
ListOfMembers
(implements org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
ListOfObjectives
org.sbml.jsbml.ext.render.
ListOfRenderInformation
<T>
org.sbml.jsbml.ext.render.
ListOfGlobalRenderInformation
org.sbml.jsbml.ext.render.
ListOfLocalRenderInformation
org.sbml.jsbml.util.
ListOfWithName
<T>
org.sbml.jsbml.ext.multi.
SubListOfSpeciesFeature
(implements org.sbml.jsbml.ext.multi.util.
ListOfSpeciesFeatureContent
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
LogicalOperator
(implements org.sbml.jsbml.ext.fbc.
Association
)
org.sbml.jsbml.ext.fbc.
And
org.sbml.jsbml.ext.fbc.
Or
org.sbml.jsbml.ext.spatial.
OrdinalMapping
org.sbml.jsbml.ext.multi.
OutwardBindingSite
org.sbml.jsbml.ext.spatial.
ParameterType
org.sbml.jsbml.ext.spatial.
AdvectionCoefficient
org.sbml.jsbml.ext.spatial.
BoundaryCondition
org.sbml.jsbml.ext.spatial.
DiffusionCoefficient
org.sbml.jsbml.ext.spatial.
SpatialSymbolReference
org.sbml.jsbml.ext.spatial.
PolygonObject
org.sbml.jsbml.ext.render.
RenderCurveSegment
(implements org.sbml.jsbml.ext.render.
Point3D
)
org.sbml.jsbml.ext.render.
RenderPoint
org.sbml.jsbml.ext.render.
RenderCubicBezier
org.sbml.jsbml.ext.comp.
SBaseRef
org.sbml.jsbml.ext.comp.
AbstractNamedSBaseRef
(implements org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.ext.comp.
Deletion
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.comp.
Port
org.sbml.jsbml.ext.comp.
ReplacedBy
org.sbml.jsbml.ext.comp.
ReplacedElement
org.sbml.jsbml.
SBMLDocument
org.sbml.jsbml.ext.multi.
SpeciesFeatureValue
org.sbml.jsbml.ext.multi.
SpeciesTypeComponentMapInProduct
org.sbml.jsbml.ext.render.
Transformation
org.sbml.jsbml.ext.render.
Transformation2D
org.sbml.jsbml.ext.render.
GraphicalPrimitive1D
org.sbml.jsbml.ext.render.
GraphicalPrimitive2D
org.sbml.jsbml.ext.render.
Ellipse
org.sbml.jsbml.ext.render.
LineEnding
(implements org.sbml.jsbml.ext.layout.
IBoundingBox
)
org.sbml.jsbml.ext.render.
Polygon
(implements org.sbml.jsbml.ext.layout.
ICurve
)
org.sbml.jsbml.ext.render.
Rectangle
(implements org.sbml.jsbml.ext.render.
Point3D
)
org.sbml.jsbml.ext.render.
RenderGroup
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
RenderCurve
(implements org.sbml.jsbml.ext.layout.
ICurve
)
org.sbml.jsbml.ext.render.
Text
(implements org.sbml.jsbml.ext.render.
FontRenderStyle
, org.sbml.jsbml.ext.render.
Point3D
)
org.sbml.jsbml.ext.render.
Image
org.sbml.jsbml.ext.spatial.
TransformationComponent
org.sbml.jsbml.
Unit
(implements org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.ext.
AbstractSBasePlugin
(implements org.sbml.jsbml.ext.
SBasePlugin
)
org.sbml.jsbml.ext.fbc.
AbstractFBCSBasePlugin
org.sbml.jsbml.ext.fbc.
FBCModelPlugin
org.sbml.jsbml.ext.fbc.
FBCReactionPlugin
org.sbml.jsbml.ext.fbc.
FBCSpeciesPlugin
org.sbml.jsbml.ext.render.
AbstractRenderPlugin
org.sbml.jsbml.ext.render.
RenderGraphicalObjectPlugin
org.sbml.jsbml.ext.render.
RenderLayoutPlugin
org.sbml.jsbml.ext.render.
RenderListOfLayoutsPlugin
org.sbml.jsbml.ext.spatial.
AbstractSpatialSBasePlugin
org.sbml.jsbml.ext.spatial.
SpatialCompartmentPlugin
org.sbml.jsbml.ext.spatial.
SpatialModelPlugin
(implements org.sbml.jsbml.util.
IdManager
)
org.sbml.jsbml.ext.spatial.
SpatialParameterPlugin
org.sbml.jsbml.ext.spatial.
SpatialReactionPlugin
org.sbml.jsbml.ext.spatial.
SpatialSpeciesPlugin
org.sbml.jsbml.ext.arrays.
ArraysSBasePlugin
(implements org.sbml.jsbml.util.
IdManager
)
org.sbml.jsbml.ext.comp.
CompSBasePlugin
org.sbml.jsbml.ext.comp.
CompModelPlugin
(implements org.sbml.jsbml.util.
IdManager
)
org.sbml.jsbml.ext.comp.
CompSBMLDocumentPlugin
org.sbml.jsbml.ext.distrib.
DistribSBasePlugin
org.sbml.jsbml.ext.dyn.
DynSBasePlugin
org.sbml.jsbml.ext.dyn.
DynCompartmentPlugin
org.sbml.jsbml.ext.dyn.
DynEventPlugin
org.sbml.jsbml.ext.groups.
GroupsModelPlugin
org.sbml.jsbml.ext.layout.
LayoutModelPlugin
org.sbml.jsbml.ext.multi.
MultiCompartmentPlugin
org.sbml.jsbml.ext.multi.
MultiModelPlugin
org.sbml.jsbml.ext.multi.
MultiSimpleSpeciesReferencePlugin
org.sbml.jsbml.ext.multi.
MultiSpeciesReferencePlugin
org.sbml.jsbml.ext.multi.
MultiSpeciesPlugin
org.sbml.jsbml.ext.qual.
QualModelPlugin
org.sbml.jsbml.ext.qual.
QualitativeModel
org.sbml.jsbml.ext.req.
ReqSBasePlugin
org.sbml.jsbml.
AnnotationElement
org.sbml.jsbml.
Annotation
org.sbml.jsbml.
Creator
org.sbml.jsbml.
CVTerm
org.sbml.jsbml.
History
org.sbml.jsbml.
ASTNode
org.sbml.jsbml.ext.render.
RelAbsVector
org.sbml.jsbml.util.
TreeNodeAdapter
org.sbml.jsbml.xml.
XMLToken
org.sbml.jsbml.xml.
XMLNode
org.sbml.jsbml.validator.offline.constraints.
AbstractValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
AssignmentCycleValidation
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownCoreAttributeAbstractValidationFunction
<T>
org.sbml.jsbml.util.filters.
AndFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.util.filters.
OrFilter
org.sbml.jsbml.ext.arrays.compiler.
ArraysCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.ext.arrays.
ArraysConstants
org.sbml.jsbml.ext.arrays.validator.constraints.
ArraysConstraint
org.sbml.jsbml.ext.arrays.validator.constraints.
ArraysMathCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
DimensionArrayDimCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
DimensionIDCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
DimensionSizeCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
IndexArrayDimCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
IndexAttributesCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
SBaseWithDimensionCheck
org.sbml.jsbml.ext.arrays.flattening.
ArraysFlattening
org.sbml.jsbml.ext.arrays.util.
ArraysMath
org.sbml.jsbml.ext.arrays.validator.
ArraysMathValidator
org.sbml.jsbml.validator.offline.constraints.
ArraysUtils
org.sbml.jsbml.ext.arrays.validator.
ArraysValidator
org.sbml.jsbml.util.filters.
AssignmentVariableFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.math.
ASTFactory
org.sbml.jsbml.math.compiler.
ASTNode2Value
<T>
org.sbml.jsbml.util.compilers.
ASTNodeValue
org.sbml.jsbml.math.
ASTUnknown
(implements org.sbml.jsbml.math.
ASTNode2
)
org.sbml.jsbml.util.filters.
BoundaryConditionFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.ext.dyn.
CBO
org.sbml.jsbml.ext.fbc.
CobraConstants
org.sbml.jsbml.text.parser.
CobraFormulaParser
(implements org.sbml.jsbml.text.parser.
CobraFormulaParserConstants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
CobraFormulaParserTokenManager
(implements org.sbml.jsbml.text.parser.
CobraFormulaParserConstants
)
org.sbml.jsbml.ext.fbc.converters.
CobraToFbcV1Converter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.ext.fbc.converters.
CobraToFbcV2Converter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.util.
CobraUtil
org.sbml.jsbml.ext.comp.
CompConstants
org.sbml.jsbml.ext.comp.util.
CompFlatteningConverter
org.sbml.jsbml.validator.offline.factory.
ConstraintFactory
org.sbml.jsbml.util.filters.
CVTermFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.validator.offline.constraints.helper.
CycleDetectionTreeNode
org.sbml.jsbml.xml.stax.
DateProcessor
org.sbml.jsbml.util.
Detail
org.sbml.jsbml.ext.arrays.validator.
DimensionValidator
org.sbml.jsbml.ext.distrib.
DistribConstants
org.sbml.jsbml.ext.distrib.util.
DistribModelBuilder
org.sbml.jsbml.validator.offline.constraints.helper.
DuplicatedElementValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
DuplicatedMathValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
DuplicatedOrMissingElementValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.ext.dyn.
DynConstants
org.sbml.jsbml.validator.offline.constraints.helper.
ElementOrderValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
java.util.EventObject (implements java.io.Serializable)
java.beans.PropertyChangeEvent
org.sbml.jsbml.ext.qual.
QualConstants
org.sbml.jsbml.util.
TreeNodeChangeEvent
org.sbml.jsbml.util.
TreeNodeRemovedEvent
org.sbml.jsbml.util.converters.
ExpandFunctionDefinitionConverter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.ext.arrays.validator.
ExtendedSBaseValidator
org.sbml.jsbml.ext.fbc.
FBCConstants
org.sbml.jsbml.ext.fbc.converters.
FbcV1ToCobraConverter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.ext.fbc.converters.
FbcV1ToFbcV2Converter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.ext.fbc.converters.
FbcV2ToCobraConverter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.ext.fbc.converters.
FbcV2ToFbcV1Converter
(implements org.sbml.jsbml.util.converters.
SBMLConverter
)
org.sbml.jsbml.math.compiler.
FindUnitsCompiler
(implements org.sbml.jsbml.math.compiler.
ASTNode2Compiler
)
org.sbml.jsbml.util.compilers.
FindUnitsCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.math.parser.
FormulaParser
(implements org.sbml.jsbml.math.parser.
FormulaParserConstants
, org.sbml.jsbml.math.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
FormulaParser
(implements org.sbml.jsbml.text.parser.
FormulaParserConstants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.math.parser.
FormulaParserASTNode2
(implements org.sbml.jsbml.math.parser.
FormulaParserASTNode2Constants
, org.sbml.jsbml.math.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
FormulaParserASTNode2
(implements org.sbml.jsbml.text.parser.
FormulaParserASTNode2Constants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.math.parser.
FormulaParserASTNode2TokenManager
(implements org.sbml.jsbml.math.parser.
FormulaParserASTNode2Constants
)
org.sbml.jsbml.text.parser.
FormulaParserASTNode2TokenManager
(implements org.sbml.jsbml.text.parser.
FormulaParserASTNode2Constants
)
org.sbml.jsbml.math.parser.
FormulaParserLL3
(implements org.sbml.jsbml.math.parser.
FormulaParserLL3Constants
, org.sbml.jsbml.math.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
FormulaParserLL3
(implements org.sbml.jsbml.text.parser.
FormulaParserLL3Constants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.math.parser.
FormulaParserLL3ASTNode2
(implements org.sbml.jsbml.math.parser.
FormulaParserLL3ASTNode2Constants
, org.sbml.jsbml.math.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
FormulaParserLL3ASTNode2
(implements org.sbml.jsbml.text.parser.
FormulaParserLL3ASTNode2Constants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.math.parser.
FormulaParserLL3ASTNode2TokenManager
(implements org.sbml.jsbml.math.parser.
FormulaParserLL3ASTNode2Constants
)
org.sbml.jsbml.text.parser.
FormulaParserLL3ASTNode2TokenManager
(implements org.sbml.jsbml.text.parser.
FormulaParserLL3ASTNode2Constants
)
org.sbml.jsbml.math.parser.
FormulaParserLL3TokenManager
(implements org.sbml.jsbml.math.parser.
FormulaParserLL3Constants
)
org.sbml.jsbml.text.parser.
FormulaParserLL3TokenManager
(implements org.sbml.jsbml.text.parser.
FormulaParserLL3Constants
)
org.sbml.jsbml.math.parser.
FormulaParserTokenManager
(implements org.sbml.jsbml.math.parser.
FormulaParserConstants
)
org.sbml.jsbml.text.parser.
FormulaParserTokenManager
(implements org.sbml.jsbml.text.parser.
FormulaParserConstants
)
org.sbml.jsbml.ext.render.director.
Geometry
org.sbml.jsbml.ext.render.director.
GlyphCreator
org.sbml.jsbml.ext.fbc.converters.
GPRParser
org.sbml.jsbml.ext.groups.
GroupsConstants
org.sbml.jsbml.util.filters.
IdenticalUnitDefinitionFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.util.filters.
IdFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.ext.arrays.validator.
IndexValidator
org.sbml.jsbml.validator.offline.constraints.helper.
InvalidAttributeValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.util.
JAXPFacade
(implements org.sbml.jsbml.util.
DocumentFactory
, org.sbml.jsbml.util.
NodeWriter
, org.sbml.jsbml.util.
SAX2Parser
)
org.sbml.jsbml.
JSBML
org.sbml.jsbml.ext.layout.
LayoutConstants
org.sbml.jsbml.ext.render.director.
LayoutDirector
<P> (implements java.lang.Runnable)
org.sbml.jsbml.xml.parsers.
LayoutParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
, org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.util.converters.
LevelVersionConverter
org.sbml.jsbml.util.converters.
ToL3Converter
org.sbml.jsbml.util.converters.
ToL3V2Converter
org.sbml.jsbml.util.compilers.
MathMLCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.compilers.
HTMLFormula
org.sbml.jsbml.xml.parsers.
MathMLParser
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.xml.parsers.
MathMLStaxParser
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
)
org.sbml.jsbml.math.compiler.
MathMLXMLStreamCompiler
org.sbml.jsbml.math.compiler.
HTMLFormula
org.sbml.jsbml.util.compilers.
MathMLXMLStreamCompiler
org.sbml.jsbml.util.
Maths
org.sbml.jsbml.util.
Message
org.sbml.jsbml.xml.xstream.converter.
MessageConverter
(implements com.thoughtworks.xstream.converters.Converter)
org.sbml.jsbml.util.filters.
MetaIdFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.util.
ModelBuilder
org.sbml.jsbml.ext.multi.
MultiConstants
org.sbml.jsbml.util.filters.
NameFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.ext.layout.
NamedSBaseReferenceFilter
org.sbml.jsbml.util.filters.
SpeciesReferenceFilter
org.sbml.jsbml.ext.fbc.converters.
NotesToAnnotation
org.sbml.jsbml.util.
Option
org.sbml.jsbml.validator.
OverdeterminationValidator
org.sbml.jsbml.util.
PackageDisabler
org.sbml.jsbml.xml.parsers.
PackageUtil
org.sbml.jsbml.util.
Pair
<L,V> (implements java.lang.Cloneable, java.util.Map.Entry<K,V>, java.io.Serializable)
org.sbml.jsbml.util.
ValuePair
<L,V> (implements java.lang.Comparable<T>)
org.sbml.jsbml.xml.parsers.
ParserManager
org.sbml.jsbml.ext.render.
RenderConstants
org.sbml.jsbml.ext.render.director.
RenderProcessor
org.sbml.jsbml.ext.req.
ReqConstants
org.sbml.jsbml.resources.
Resource
java.util.ResourceBundle
org.sbml.jsbml.validator.offline.i18n.
SBMLErrorMessage
org.sbml.jsbml.validator.offline.i18n.
SBMLErrorPostMessage
org.sbml.jsbml.validator.offline.i18n.fr.
SBMLErrorPostMessage_fr
org.sbml.jsbml.validator.offline.i18n.
SBMLErrorPreMessage
org.sbml.jsbml.validator.offline.i18n.
SBMLErrorPreMessage_en_EN_L2V1
org.sbml.jsbml.validator.offline.i18n.
SBMLErrorPreMessage_en_EN_L3V1
org.sbml.jsbml.validator.offline.i18n.
SBMLErrorShortMessage
java.util.ResourceBundle.Control
org.sbml.jsbml.util.
XMLResourceBundleControl
org.sbml.jsbml.util.
ResourceManager
org.sbml.jsbml.xml.parsers.
SBMLCoreParser
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.xml.xstream.converter.
SBMLErrorConverter
(implements com.thoughtworks.xstream.converters.Converter)
org.sbml.jsbml.validator.offline.factory.
SBMLErrorFactory
org.sbml.jsbml.
SBMLErrorLog
org.sbml.jsbml.xml.stax.
SBMLObjectForXML
org.sbml.jsbml.xml.parsers.
SBMLRDFAnnotationParser
(implements org.sbml.jsbml.xml.parsers.
AnnotationReader
, org.sbml.jsbml.xml.parsers.
AnnotationWriter
)
org.sbml.jsbml.
SBMLReader
(implements java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.xml.stax.
SBMLReader
org.sbml.jsbml.util.
SBMLtools
org.sbml.jsbml.validator.
SBMLValidator
org.sbml.jsbml.
SBMLWriter
(implements java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.
TidySBMLWriter
(implements java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.xml.stax.
SBMLWriter
org.sbml.jsbml.
SBO
org.sbml.jsbml.util.filters.
SBOFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.validator.offline.constraints.helper.
SBOValidationConstraints
org.sbml.jsbml.util.filters.
SIdFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.math.parser.
SimpleCharStream
org.sbml.jsbml.text.parser.
SimpleCharStream
org.sbml.jsbml.ext.render.director.
SimpleLayoutAlgorithm
(implements org.sbml.jsbml.ext.render.director.
LayoutAlgorithm
)
org.sbml.jsbml.util.
SimpleTreeNodeChangeListener
(implements java.io.Serializable, org.sbml.jsbml.util.
TreeNodeChangeListener
)
org.sbml.jsbml.ext.spatial.
SpatialConstants
org.sbml.jsbml.ext.spatial.
SpatialTest
org.sbml.jsbml.ext.arrays.compiler.
StaticallyComputableCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.
StringTools
org.sbml.jsbml.math.compiler.
FormulaCompiler
(implements org.sbml.jsbml.math.compiler.
ASTNode2Compiler
)
org.sbml.jsbml.math.compiler.
LibSBMLFormulaCompiler
org.sbml.jsbml.util.compilers.
FormulaCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.compilers.
FormulaCompilerLibSBML
org.sbml.jsbml.util.compilers.
ConfigurableLogicalFormulaCompiler
org.sbml.jsbml.util.compilers.
FormulaCompilerNoPiecewise
org.sbml.jsbml.util.compilers.
LibSBMLFormulaCompiler
org.sbml.jsbml.math.compiler.
LaTeXCompiler
(implements org.sbml.jsbml.math.compiler.
ASTNode2Compiler
)
org.sbml.jsbml.util.compilers.
LaTeXCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.
SubModel
org.sbml.jsbml.validator.
SyntaxChecker
org.sbml.jsbml.ontology.
Term
(implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Error
org.sbml.jsbml.util.
NotImplementedException
org.sbml.jsbml.math.parser.
TokenMgrError
org.sbml.jsbml.text.parser.
TokenMgrError
java.lang.Exception
org.sbml.jsbml.validator.
ModelOverdeterminedException
org.sbml.jsbml.math.parser.
ParseException
org.sbml.jsbml.text.parser.
ParseException
java.lang.RuntimeException
org.sbml.jsbml.xml.
XMLException
org.sbml.jsbml.
SBMLError
org.sbml.jsbml.
LevelVersionError
org.sbml.jsbml.
PropertyException
org.sbml.jsbml.
PropertyNotAvailableException
org.sbml.jsbml.
PropertyUndefinedError
org.sbml.jsbml.
SBMLTypeUndefinedException
org.sbml.jsbml.
SBMLException
org.sbml.jsbml.
IdentifierException
org.sbml.jsbml.math.compiler.
UnitException
org.sbml.jsbml.util.compilers.
UnitException
org.sbml.jsbml.math.parser.
Token
(implements java.io.Serializable)
org.sbml.jsbml.text.parser.
Token
(implements java.io.Serializable)
org.sbml.jsbml.ontology.
Triple
(implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
org.sbml.jsbml.validator.offline.constraints.helper.
UniqueValidation
<T,U> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.math.compiler.
UnitsCompiler
(implements org.sbml.jsbml.math.compiler.
ASTNode2Compiler
)
org.sbml.jsbml.util.compilers.
UnitsCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.validator.offline.constraints.helper.
ValidationUnitsCompiler
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownAttributeValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownCoreAttributeValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownCoreElementValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownElementValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownPackageAttributeValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.constraints.helper.
UnknownPackageElementValidationFunction
<T> (implements org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>)
org.sbml.jsbml.validator.offline.
ValidationContext
org.sbml.jsbml.validator.offline.
LoggingValidationContext
(implements org.sbml.jsbml.validator.offline.
ValidationListener
)
org.sbml.jsbml.validator.offline.constraints.helper.
ValidationTools
org.sbml.jsbml.ext.arrays.compiler.
VectorCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.xml.
XMLAttributes
(implements java.io.Serializable)
org.sbml.jsbml.xml.stax.
XMLLogger
org.sbml.jsbml.xml.
XMLNamespaces
(implements java.io.Serializable)
org.sbml.jsbml.util.filters.
XMLNodeFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.xml.parsers.
XMLNodeReader
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
)
org.sbml.jsbml.xml.parsers.
XMLNodeWriter
org.sbml.jsbml.ext.render.
XMLTools
org.sbml.jsbml.xml.
XMLTriple
(implements java.io.Serializable)
Interface Hierarchy
org.sbml.jsbml.xml.parsers.
AnnotationReader
org.sbml.jsbml.xml.parsers.
AnnotationWriter
org.sbml.jsbml.validator.offline.constraints.
AnyConstraint
<T>
org.sbml.jsbml.math.compiler.
ASTNode2Compiler
org.sbml.jsbml.util.compilers.
ASTNodeCompiler
java.lang.Cloneable
org.sbml.jsbml.util.
TreeNodeWithChangeSupport
(also extends java.io.Serializable, javax.swing.tree.TreeNode)
org.sbml.jsbml.math.
ASTNode2
org.sbml.jsbml.math.
ASTCSymbolBaseNode
org.sbml.jsbml.math.
ASTCSymbolNode
org.sbml.jsbml.ext.
ASTNodePlugin
org.sbml.jsbml.
SBase
org.sbml.jsbml.ext.fbc.
Association
org.sbml.jsbml.ext.multi.util.
ListOfSpeciesFeatureContent
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CompartmentalizedSBase
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
(also extends org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
(also extends org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.ext.
SBasePlugin
org.sbml.jsbml.text.parser.
CobraFormulaParserConstants
org.sbml.jsbml.validator.offline.constraints.
ConstraintDeclaration
org.sbml.jsbml.validator.offline.constraints.
CoreSpecialErrorCodes
org.sbml.jsbml.util.
DocumentFactory
java.util.EventListener
org.sbml.jsbml.util.
ProgressListener
java.beans.PropertyChangeListener
org.sbml.jsbml.util.
TreeNodeChangeListener
org.sbml.jsbml.util.filters.
Filter
org.sbml.jsbml.ext.render.
FontRenderStyle
org.sbml.jsbml.math.parser.
FormulaParserASTNode2Constants
org.sbml.jsbml.text.parser.
FormulaParserASTNode2Constants
org.sbml.jsbml.math.parser.
FormulaParserConstants
org.sbml.jsbml.text.parser.
FormulaParserConstants
org.sbml.jsbml.math.parser.
FormulaParserLL3ASTNode2Constants
org.sbml.jsbml.text.parser.
FormulaParserLL3ASTNode2Constants
org.sbml.jsbml.math.parser.
FormulaParserLL3Constants
org.sbml.jsbml.text.parser.
FormulaParserLL3Constants
org.sbml.jsbml.ext.layout.
IBoundingBox
org.sbml.jsbml.ext.layout.
ICurve
org.sbml.jsbml.util.
IdManager
org.sbml.jsbml.math.parser.
IFormulaParser
org.sbml.jsbml.text.parser.
IFormulaParser
org.sbml.jsbml.ext.render.director.
LayoutAlgorithm
org.sbml.jsbml.ext.render.director.
LayoutBuilder
<P>
org.sbml.jsbml.ext.render.director.
LayoutFactory
<NodeT,ArcT>
org.sbml.jsbml.util.
NodeWriter
org.sbml.jsbml.xml.parsers.
PackageParser
org.sbml.jsbml.ext.render.
Point3D
org.sbml.jsbml.xml.parsers.
ReadingParser
org.sbml.jsbml.util.
SAX2Parser
org.sbml.jsbml.ext.render.director.
SBGNArc
<T>
org.sbml.jsbml.ext.render.director.
Catalysis
<T>
org.sbml.jsbml.ext.render.director.
Consumption
<T>
org.sbml.jsbml.ext.render.director.
Inhibition
<T>
org.sbml.jsbml.ext.render.director.
Modulation
<T>
org.sbml.jsbml.ext.render.director.
NecessaryStimulation
<T>
org.sbml.jsbml.ext.render.director.
Production
<T>
org.sbml.jsbml.ext.render.director.
ReversibleConsumption
<T>
org.sbml.jsbml.ext.render.director.
Stimulation
<T>
org.sbml.jsbml.ext.render.director.
SBGNNode
<T>
org.sbml.jsbml.ext.render.director.
SBGNNodeWithCloneMarker
<T>
org.sbml.jsbml.ext.render.director.
SBGNProcessNode
<T>
org.sbml.jsbml.ext.render.director.
AssociationNode
<T>
org.sbml.jsbml.ext.render.director.
DissociationNode
<T>
org.sbml.jsbml.ext.render.director.
OmittedProcessNode
<T>
org.sbml.jsbml.ext.render.director.
ProcessNode
<T>
org.sbml.jsbml.ext.render.director.
UncertainProcessNode
<T>
org.sbml.jsbml.util.converters.
SBMLConverter
org.sbml.jsbml.validator.offline.factory.
SBMLErrorCodes
org.sbml.jsbml.
SBMLInputConverter
<T>
org.sbml.jsbml.
SBMLOutputConverter
<T>
java.io.Serializable
org.sbml.jsbml.util.
TreeNodeWithChangeSupport
(also extends java.lang.Cloneable, javax.swing.tree.TreeNode)
org.sbml.jsbml.math.
ASTNode2
org.sbml.jsbml.math.
ASTCSymbolBaseNode
org.sbml.jsbml.math.
ASTCSymbolNode
org.sbml.jsbml.ext.
ASTNodePlugin
org.sbml.jsbml.
SBase
org.sbml.jsbml.ext.fbc.
Association
org.sbml.jsbml.ext.multi.util.
ListOfSpeciesFeatureContent
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CompartmentalizedSBase
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
(also extends org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
(also extends org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.ext.
SBasePlugin
javax.swing.tree.TreeNode
org.sbml.jsbml.util.
TreeNodeWithChangeSupport
(also extends java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.math.
ASTNode2
org.sbml.jsbml.math.
ASTCSymbolBaseNode
org.sbml.jsbml.math.
ASTCSymbolNode
org.sbml.jsbml.ext.
ASTNodePlugin
org.sbml.jsbml.
SBase
org.sbml.jsbml.ext.fbc.
Association
org.sbml.jsbml.ext.multi.util.
ListOfSpeciesFeatureContent
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CompartmentalizedSBase
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
(also extends org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
(also extends org.sbml.jsbml.
UniqueSId
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.ext.
SBasePlugin
org.sbml.jsbml.
UniqueSId
org.sbml.jsbml.
Assignment
(also extends org.sbml.jsbml.
MathContainer
)
org.sbml.jsbml.
UniqueNamedSBase
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.validator.offline.constraints.
ValidationFunction
<T>
org.sbml.jsbml.validator.offline.
ValidationListener
org.sbml.jsbml.xml.parsers.
WritingParser
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.sbml.jsbml.
ASTNode.Type
org.sbml.jsbml.ext.multi.
BindingStatus
org.sbml.jsbml.ext.spatial.
BoundaryConditionKind
org.sbml.jsbml.ext.spatial.
CompressionKind
org.sbml.jsbml.ext.spatial.
CoordinateKind
org.sbml.jsbml.ext.layout.
CurveSegment.Type
org.sbml.jsbml.
CVTerm.Qualifier
org.sbml.jsbml.
CVTerm.Type
org.sbml.jsbml.ext.spatial.
DataKind
org.sbml.jsbml.ext.spatial.
DiffusionKind
org.sbml.jsbml.ext.fbc.
FBCList
org.sbml.jsbml.ext.fbc.
FluxBound.Operation
org.sbml.jsbml.ext.render.
FontFamily
org.sbml.jsbml.text.parser.
FormulaParserLL3.LOG_BEHAVIOR
org.sbml.jsbml.ext.spatial.
FunctionKind
org.sbml.jsbml.ext.spatial.
GeometryKind
org.sbml.jsbml.ext.render.
GradientBase.Spread
org.sbml.jsbml.ext.render.
GraphicalPrimitive2D.FillRule
org.sbml.jsbml.ext.groups.
Group.Kind
org.sbml.jsbml.ext.render.
HTextAnchor
org.sbml.jsbml.ext.qual.
InputTransitionEffect
org.sbml.jsbml.ext.spatial.
InterpolationKind
org.sbml.jsbml.
ListOf.Type
org.sbml.jsbml.ext.fbc.
Objective.Type
org.sbml.jsbml.ext.qual.
OutputTransitionEffect
org.sbml.jsbml.ext.spatial.
PolygonKind
org.sbml.jsbml.ext.spatial.
PrimitiveKind
org.sbml.jsbml.ext.qual.
QualList
org.sbml.jsbml.ext.multi.
Relation
org.sbml.jsbml.ext.render.
RenderCurveSegment.Type
org.sbml.jsbml.ext.multi.
RepresentationType
org.sbml.jsbml.
SBMLError.SEVERITY
org.sbml.jsbml.
SBMLException.Category
org.sbml.jsbml.
SBMLException.Code
org.sbml.jsbml.
SBMLException.Type
org.sbml.jsbml.validator.
SBMLValidator.CHECK_CATEGORY
org.sbml.jsbml.ext.spatial.
SetOperation
org.sbml.jsbml.ext.qual.
Sign
org.sbml.jsbml.ext.render.director.
SimpleLayoutAlgorithm.RelativePosition
org.sbml.jsbml.ext.dyn.
SpatialKind
org.sbml.jsbml.ext.layout.
SpeciesReferenceRole
org.sbml.jsbml.ext.render.
Style.Type
org.sbml.jsbml.ext.distrib.
UncertParameter.Type
org.sbml.jsbml.
Unit.Kind
org.sbml.jsbml.ext.render.
VTextAnchor
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Generated at January 5 2022
Version 1.6.1-SNAPSHOT Revision ed2d2b5c6574a3d1769c1e26e09e14e700d571fa
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