Interface | Description |
---|---|
org.sbml.jsbml.ext.spatial.SpatialNamedSBase |
since id and name have been added to the spatial package classes, this interface is not needed any more and
NamedSBase can be used instead. |
Class | Description |
---|---|
org.sbml.jsbml.CompartmentType |
Only valid in SBML Level 2 for Versions 2 through 4.
|
org.sbml.jsbml.ext.spatial.CoordinateReference |
Not present in spec 0.90, as be moved into DiffusionCoefficient.
|
org.sbml.jsbml.ext.fbc.FluxBound |
Only defined in FBC Version 1.
|
org.sbml.jsbml.ext.groups.ListOfMemberConstraint |
This class was removed from the specifications as of version 0.7
(2015-11-24) as no software wanted to implement support for it.
It might be added back in a future version of the specifications
if somebody want to implement it.
|
org.sbml.jsbml.util.ListOfWithName |
since JSBML 1.2 and the introduction of
ListOf.setOtherListName(String) , this class is not necessary any more. |
org.sbml.jsbml.util.compilers.MathMLCompiler |
use
MathMLXMLStreamCompiler instead. |
org.sbml.jsbml.xml.parsers.MathMLParser |
this class should not be used anymore, replaced by
MathMLStaxParser . But we keep it in case somebody want to
use Document |
org.sbml.jsbml.ext.groups.MemberConstraint |
This class was removed from the specifications as of version 0.7
(2015-11-24) as no software wanted to implement support for it.
It might be added back in a future version of the specifications
if somebody want to implement it.
|
org.sbml.jsbml.ext.spatial.PolygonObject | |
org.sbml.jsbml.ext.qual.QualitativeModel |
use
QualModelPlugin instead. |
org.sbml.jsbml.SpeciesType |
Only valid in SBML Level 2 for Versions 2 through 4.
|
org.sbml.jsbml.StoichiometryMath |
Since SBML Level 3 Version 1 use
AssignmentRule with
instances of SpeciesReference as Variable
instead. |
Enum | Description |
---|---|
org.sbml.jsbml.ext.fbc.FluxBound.Operation |
Only defined in FBC version 1.
|
Enum Constant | Description |
---|---|
org.sbml.jsbml.Unit.Kind.CELSIUS |
use
Unit.Kind.KELVIN instead (1 Celsius = 1 K + 271.15) |
org.sbml.jsbml.Unit.Kind.LITER |
use
Unit.Kind.LITRE instead. |
org.sbml.jsbml.Unit.Kind.METER |
use
Unit.Kind.METRE instead. |