java.io.Serializable
, java.lang.Cloneable
, javax.swing.tree.TreeNode
, NamedSBase
, SBase
, UniqueNamedSBase
, UniqueSId
, TreeNodeWithChangeSupport
@Deprecated public class FluxBound extends AbstractNamedSBase implements UniqueNamedSBase
FluxBound
is an FBC Version 1 class which holds a single (in)equality that provides
the maximum or minimum value that a reaction flux can obtain at steady state.Modifier and Type | Class | Description |
---|---|---|
static class |
FluxBound.Operation |
Deprecated.
Only defined in FBC version 1.
|
JSBML_WRONG_SBO_TERM
Constructor | Description |
---|---|
FluxBound() |
Deprecated.
Only defined in FBC version 1.
|
FluxBound(int level,
int version) |
Deprecated.
Only defined in FBC version 1.
|
FluxBound(java.lang.String id) |
Deprecated.
Only defined in FBC version 1.
|
FluxBound(java.lang.String id,
int level,
int version) |
Deprecated.
Only defined in FBC version 1.
|
FluxBound(java.lang.String id,
java.lang.String name,
int level,
int version) |
Deprecated.
Only defined in FBC version 1.
|
FluxBound(FluxBound fb) |
Deprecated.
Only defined in FBC version 1.
|
Modifier and Type | Method | Description |
---|---|---|
FluxBound |
clone() |
Deprecated.
|
boolean |
equals(java.lang.Object obj) |
Deprecated.
|
FluxBound.Operation |
getOperation() |
Deprecated.
|
java.lang.String |
getReaction() |
Deprecated.
Only defined in FBC version 1.
|
Reaction |
getReactionInstance() |
Deprecated.
Only defined in FBC version 1.
|
double |
getValue() |
Deprecated.
Only defined in FBC version 1.
|
int |
hashCode() |
Deprecated.
|
void |
initDefaults() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
isIdMandatory() |
Deprecated.
|
boolean |
isSetOperation() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
isSetReaction() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
isSetReactionInstance() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
isSetValue() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
readAttribute(java.lang.String attributeName,
java.lang.String prefix,
java.lang.String value) |
Deprecated.
|
void |
setOperation(FluxBound.Operation operation) |
Deprecated.
Only defined in FBC version 1.
|
void |
setReaction(java.lang.String reaction) |
Deprecated.
Only defined in FBC version 1.
|
void |
setReaction(Reaction reaction) |
Deprecated.
Only defined in FBC version 1.
|
void |
setValue(double value) |
Deprecated.
Only defined in FBC version 1.
|
boolean |
unsetOperation() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
unsetReaction() |
Deprecated.
Only defined in FBC version 1.
|
boolean |
unsetValue() |
Deprecated.
Only defined in FBC version 1.
|
java.util.Map<java.lang.String,java.lang.String> |
writeXMLAttributes() |
Deprecated.
|
isValidId
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, addResources, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllDeclaredNamespaces, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getFirstElementIndex, getHistory, getId, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTreeNodeChangeListener, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
children, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeaf
addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
@Deprecated public FluxBound()
@Deprecated public FluxBound(FluxBound fb)
fb
- @Deprecated public FluxBound(int level, int version)
level
- version
- @Deprecated public FluxBound(java.lang.String id)
id
- @Deprecated public FluxBound(java.lang.String id, int level, int version)
FluxBound
instance with an id, level, and version.id
- level
- version
- @Deprecated public FluxBound(java.lang.String id, java.lang.String name, int level, int version)
id
- name
- level
- version
- @Deprecated public FluxBound clone()
SBase
SBase
with the same
properties
like this one.clone
in interface SBase
clone
in class AbstractSBase
@Deprecated public boolean equals(java.lang.Object obj)
SBase
@Deprecated public FluxBound.Operation getOperation()
@Deprecated public java.lang.String getReaction()
@Deprecated public Reaction getReactionInstance()
Reaction
to which this flux bound belongs.@Deprecated public double getValue()
@Deprecated public int hashCode()
SBase
SBase
instance.hashCode
in interface SBase
hashCode
in class AbstractSBase
SBase
instance.Object.hashCode()
@Deprecated public void initDefaults()
@Deprecated public boolean isIdMandatory()
SBase
true
if the identifier of this
SBase
is required to be defined (i.e., not null
)
in the definition of SBML.isIdMandatory
in interface NamedSBase
isIdMandatory
in interface SBase
isIdMandatory
in class AbstractSBase
true
if the identifier of this element must be set in
order to create a valid SBML representation. false
otherwise, i.e., if the identifier can be understood as an optional
attribute.@Deprecated public boolean isSetOperation()
@Deprecated public boolean isSetReaction()
@Deprecated public boolean isSetReactionInstance()
true
if a Reaction
with the id given by
getReaction()
exists in the Model
, false
otherwise.@Deprecated public boolean isSetValue()
@Deprecated public boolean readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
SBase
SBase
.
If the given attribute name is not recognized, nothing is done and
false
is returned.
readAttribute
in interface SBase
readAttribute
in class AbstractSBase
attributeName
- localName of the XML attributeprefix
- prefix of the XML attributevalue
- value of the XML attributetrue
if the attribute has been successfully read.@Deprecated public void setOperation(FluxBound.Operation operation)
operation
- the operation to set@Deprecated public void setReaction(Reaction reaction)
reaction
- @Deprecated public void setReaction(java.lang.String reaction)
reaction
- the reaction id to set@Deprecated public void setValue(double value)
value
- the value to set@Deprecated public boolean unsetOperation()
true
, if operation was set before,
otherwise false
@Deprecated public boolean unsetReaction()
true
, if reaction was set before,
otherwise false
@Deprecated public boolean unsetValue()
true
, if value was set before,
otherwise false
@Deprecated public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()
SBase
SBase
that
need to be written out in XML.
The attribute name is used as a key and the attribute value as value. If a prefix is needed for the attribute name, it need to be set directly in this map.
writeXMLAttributes
in interface SBase
writeXMLAttributes
in class AbstractSBase
Map
containing the XML attributes of this object.