L-Index (JSBML 1.6.1-SNAPSHOT API Specification)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

L

L1V1CompartmentVolumeReqd - org.sbml.jsbml.SBMLException.Code: Compartment volume must be specified
L3LayoutParser - Class in org.sbml.jsbml.xml.parsers: This class is used to parse the layout extension package elements and attributes.
L3LayoutParser() - Constructor for class org.sbml.jsbml.xml.parsers.L3LayoutParser
label - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
label(String) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
label(String) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
lambda(List<ASTNode>) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: The body of a FunctionDefinition.
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
lambda(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
lambda(List<ASTNode2>) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler: The body of a FunctionDefinition.
lambda(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
lambda(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
lambda(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
lambda(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
LAMBDA - org.sbml.jsbml.ASTNode.Type: This type describes function definitions: The first n children of a node of this type are the arguments, and the last child is the function body.
LambdaOnlyAllowedInFunctionDef - org.sbml.jsbml.SBMLException.Code: Use of <lambda> not permitted outside of a <functionDefinition>
lastIndexOf(Object) - Method in class org.sbml.jsbml.ListOf
LaTeXCompiler - Class in org.sbml.jsbml.math.compiler: Converts ASTNode2Value objects into a LaTeX String to be included into scientific writings or to be displayed in a GUI.
LaTeXCompiler - Class in org.sbml.jsbml.util.compilers: Converts ASTNodeValue objects into a LaTeX String to be included into scientific writings or to be displayed in a GUI.
LaTeXCompiler() - Constructor for class org.sbml.jsbml.math.compiler.LaTeXCompiler
LaTeXCompiler() - Constructor for class org.sbml.jsbml.util.compilers.LaTeXCompiler: Creates a new LaTeXCompiler instance.
LaTeXCompiler(boolean) - Constructor for class org.sbml.jsbml.math.compiler.LaTeXCompiler
LaTeXCompiler(boolean) - Constructor for class org.sbml.jsbml.util.compilers.LaTeXCompiler: Creates a new LaTeXCompiler instance.
layered - org.sbml.jsbml.ext.spatial.FunctionKind: Math child element contains an inequality
layout - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
Layout - Class in org.sbml.jsbml.ext.layout: The Layout class stores layout information for some or all elements of the Model as well as additional objects that need not be connected to the Model.
Layout() - Constructor for class org.sbml.jsbml.ext.layout.Layout
Layout(int, int) - Constructor for class org.sbml.jsbml.ext.layout.Layout
Layout(String, int, int) - Constructor for class org.sbml.jsbml.ext.layout.Layout
Layout(Layout) - Constructor for class org.sbml.jsbml.ext.layout.Layout
LAYOUT_10100 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010100:
LAYOUT_10101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010101: To conform to Version 1 of the Layout package specification for SBML Level 3, an SBML document must declare the use of the following XML Namespace: 'http://www.sbml.org/sbml/level3/version1/layout/version1' Reference: L3V1 Layout V1 Section 3.1
LAYOUT_10102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010102: Wherever they appear in an SBML document, elements and attributes from the Layout package must be declared either implicitly or explicitly to be in the XML namespace 'http://www.sbml.org/sbml/level3/version1/layout/version1' Reference: L3V1 Layout V1 Section 3.1
LAYOUT_10301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010301: (Extends validation rule #10301 in the SBML Level 3 Version 1 Core specification.)
LAYOUT_10302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010302: The value of the 'layout:id' attribute must conform to the SBML data type SId Reference: L3V1 Layout V1 Section 3.3
LAYOUT_10401 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010401: The attribute 'xsi:type' must be present on all <lineSegment> and <cubicBezier> objects.
LAYOUT_10402 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6010402: The value of the 'xsi:type' attribute must be either 'LineSegment' or 'CubicBezier' appropriate to the object where it is located.
LAYOUT_20101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020101: In all SBML documents using the Layout package, the SBML object must include a value for the attribute 'layout:required'.
LAYOUT_20102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020102: The value of attribute 'layout:required' on the SBML object must be of the data type Boolean.
LAYOUT_20103 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020103: The value of attribute 'layout:required' on the SBML object must be set to 'false'.
LAYOUT_20201 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020201: There may be at most one instance of <listOfLayouts> element within a <model> object using Layout.
LAYOUT_20202 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020202: The <listOfLayouts> within a <model> object is optional, but if present, this object must not be empty.
LAYOUT_20203 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020203: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfLayouts> container object may only contain <layout> objects.
LAYOUT_20204 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020204: A <listOfLayouts> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020301: A <layout> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020302: A <layout> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20303 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020303: There may be at most one instance of each of the following kinds of objects within a <layout> object: <listOfCompartmentGlyphs>, <listOfSpeciesGlyphs>, <listOfReactionGlyphs>, <listOfTextGlyphs>, <listOfAdditionalGraphicalObjects>.
LAYOUT_20304 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020304: The various ListOf subobjects within a <layout> object are optional, but if present, these container object must not be empty.
LAYOUT_20305 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020305: A <layout> object must have the required attribute 'layout:id' and may have the optional attribute 'layout:name'.
LAYOUT_20306 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020306: The attribute 'layout:name' of a <layout> must be of the data type 'string'.
LAYOUT_20307 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020307: A <listOfCompartmentGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20308 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020308: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfCompartmentGlyphs> container object may only contain <compartmentGlyph> objects.
LAYOUT_20309 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020309: A <listOfSpeciesGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20310 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020310: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfSpeciesGlyphs> container object may only contain <compartmentGlyph> objects.
LAYOUT_20311 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020311: A <listOfReactionGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20312 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020312: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfReactionGlyphs> container object may only contain <compartmentGlyph> objects.
LAYOUT_20313 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020313: A <listOfAdditionalGraphicalObjectGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20314 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020314: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfAdditionalGraphicalObjectGlyphs> container object may only contain <compartmentGlyph> objects.
LAYOUT_20315 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020315: A <layout> object must contain exactly one <dimensions> object.
LAYOUT_20316 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020316: A <listOfTextGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20317 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020317: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfTextGlyphs> container object may only contain <compartmentGlyph> objects.
LAYOUT_20401 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020401: A <graphicalObject> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20402 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020402: A <graphicalObject> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20403 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020403: There may be at most one instance of a <boundingBox> object on a <graphicalObject>.
LAYOUT_20404 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020404: A <graphicalObject> object must have the required attribute 'layout:id' and may have the optional attribute 'layout:metaidRef'.
LAYOUT_20405 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020405: The attribute 'layout:metaidRef' of a <graphicalObject> must be of the data type 'IDREF'.
LAYOUT_20406 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020406: The value of a 'layout:metaidRef' attribute of a <graphicalObject> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_20407 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020407: A <graphicalObject> must contain exactly one <boundingBox> object.
LAYOUT_20501 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020501: A <compartmentGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20502 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020502: A <compartmentGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20503 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020503: There may be at most one instance of a <boundingBox> object on a <compartmentGlyph>.
LAYOUT_20504 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020504: A <compartmentGlyph> object must have the required attribute 'layout:id' and may have the optional attributes 'layout:metaidRef' or 'layout:compartment'.
LAYOUT_20505 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020505: The attribute 'layout:metaidRef' of a <compartmentGlyph> must be of the data type 'IDREF'.
LAYOUT_20506 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020506: The value of a 'layout:metaidRef' attribute of a <compartmentGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_20507 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020507: The attribute 'layout:compartment' of a <compartmentGlyph> must be the data type 'SIdRef'.
LAYOUT_20508 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020508: The value of the 'layout:compartment' attribute of a <compartmentGlyph> must be of the 'id' of an existing <compartment> in the <model>.
LAYOUT_20509 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020509: If both attributes 'layout:compartment' and 'layout:metaidRef' are specified on a <compartmentGlyph> they have to reference the same <compartment> in the <model>.
LAYOUT_20510 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020510: The attribute 'layout:order' of a <compartmentGlyph> must be the data type 'double'.
LAYOUT_20601 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020601: A <speciesGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20602 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020602: A <speciesGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20603 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020603: There may be at most one instance of a <boundingBox> object on a <speciesGlyph>.
LAYOUT_20604 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020604: A <speciesGlyph> object must have the required attribute 'layout:id' and may have the optional attributes 'layout:metaidRef' or 'layout:species'.
LAYOUT_20605 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020605: The attribute 'layout:metaidRef' of a <speciesGlyph> must be of the data type 'IDREF'.
LAYOUT_20606 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020606: The value of a 'layout:metaidRef' attribute of a <speciesGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_20607 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020607: The attribute 'layout:species' of a <speciesGlyph> must be the data type 'SIdRef'.
LAYOUT_20608 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020608: The value of the 'layout:species' attribute of a <speciesGlyph> must be of the 'id' of an existing <species> in the <model>.
LAYOUT_20609 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020609: If both attributes 'layout:species' and 'layout:metaidRef' are specified on a <speciesGlyph> they have to reference the same <species> in the <model>.
LAYOUT_20701 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020701: A <reactionGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20702 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020702: A <reactionGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20703 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020703: There may be at most one instance of each of the following kinds of objects within a <reactionGlyph> object: <boundingBox>, and <curve> and there must be one instance of the <listOfSpeciesReferenceGlyphs>.
LAYOUT_20704 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020704: A <reactionGlyph> object must have the required attribute 'layout:id' and may have the optional attributes 'layout:metaidRef' or 'layout:reaction'.
LAYOUT_20705 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020705: The attribute 'layout:metaidRef' of a <reactionGlyph> must be of the data type 'IDREF'.
LAYOUT_20706 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020706: The value of a 'layout:metaidRef' attribute of a <reactionGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_20707 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020707: The attribute 'layout:reaction' of a <reactionGlyph> must be the data type 'SIdRef'.
LAYOUT_20708 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020708: The value of the 'layout:reaction' attribute of a <reactionGlyph> must be of the 'id' of an existing <reaction> in the <model>.
LAYOUT_20709 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020709: If both attributes 'layout:reaction' and 'layout:metaidRef' are specified on a <reactionGlyph> they have to reference the same <reaction> in the <model>.
LAYOUT_20710 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020710: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfSpeciesReferenceGlyphs> container object may only contain <speciesReferenceGlyph> objects.
LAYOUT_20711 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020711: A <listOfSpeciesReferenceGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20712 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020712: A <listOfSpeciesReferenceGlyphs> container object must not be empty.
LAYOUT_20801 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020801: A <generalGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20802 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020802: A <generalGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20803 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020803: There may be at most one instance of each of the following kinds of objects within a <generalGlyph> object: <boundingBox>, <curve>, <listOfReferenceGlyphs> and <listOfSubGlyphs>.
LAYOUT_20804 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020804: A <generalGlyph> object must have the required attribute 'layout:id' and may have the optional attributes 'layout:metaidRef' or 'layout:reference'.
LAYOUT_20805 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020805: The attribute 'layout:metaidRef' of a <generalGlyph> must be of the data type 'IDREF'.
LAYOUT_20806 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020806: The value of a 'layout:metaidRef' attribute of a <generalGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_20807 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020807: The attribute 'layout:reference' of a <generalGlyph> must be the data type 'SIdRef'.
LAYOUT_20808 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020808: The value of the 'layout:reference' attribute of a <generalGlyph> must be of the 'id' of an existing element in the <model>.
LAYOUT_20809 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020809: If both attributes 'layout:reference' and 'layout:metaidRef' are specified on a <generalGlyph> they have to reference the same element in the <model>.
LAYOUT_20810 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020810: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfReferenceGlyphs> container object may only contain <referenceGlyph> objects.
LAYOUT_20811 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020811: A <listOfReferenceGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20812 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020812:
LAYOUT_20813 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020813: A <listOfSubGlyphs> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_20901 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020901: A <textGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_20902 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020902: A <textGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_20903 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020903: A <textGlyph> must contain exactly one <boundingBox> object.
LAYOUT_20904 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020904: A <textGlyph> object must have the required attribute 'layout:id' and may have the optional attributes 'layout:metaidRef', 'layout:graphicalObject', 'layout:text' and 'layout:originOfText'.
LAYOUT_20905 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020905: The attribute 'layout:metaidRef' of a <textGlyph> must be of the data type 'IDREF'.
LAYOUT_20906 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020906: The value of a 'layout:metaidRef' attribute of a <textGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_20907 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020907: The attribute 'layout:originOfText' of a <textGlyph> must be the data type 'SIdRef'.
LAYOUT_20908 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020908: The value of the 'layout:originOfText' attribute of a <textGlyph> must be of the 'id' of an existing element in the <model>.
LAYOUT_20909 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020909: If both attributes 'layout:originOfText' and 'layout:metaidRef' are specified on a <textGlyph> they have to reference the same element in the <model>.
LAYOUT_20910 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020910: The attribute 'layout:graphicalObject' of a <textGlyph> must be the data type 'SIdRef'.
LAYOUT_20911 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020911: The value of the 'layout:graphicalObject' attribute of a <textGlyph> must be of the 'id' of an existing <graphicalObject> (or derived) element in the <layout>.
LAYOUT_20912 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6020912: The attribute 'layout:text' of a <textGlyph> must be the data type 'string'.
LAYOUT_21001 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021001: A <speciesReferenceGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21002 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021002: A <speciesReferenceGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21003 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021003: A <speciesReferenceGlyph> may have at most one instance of a <boundingBox> and <curve> object.
LAYOUT_21004 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021004: A <speciesReferenceGlyph> object must have the required attribute 'layout:id' and may have the optional attributes 'layout:metaidRef', 'layout:speciesReference' and 'layout:role'.
LAYOUT_21005 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021005: The attribute 'layout:metaidRef' of a <speciesReferenceGlyph> must be of the data type 'IDREF'.
LAYOUT_21006 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021006: The value of a 'layout:metaidRef' attribute of a <speciesReferenceGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_21007 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021007: The attribute 'layout:speciesReference' of a <speciesReferenceGlyph> must be the data type 'SIdRef'.
LAYOUT_21008 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021008: The value of the 'layout:speciesReference' attribute of a <speciesReferenceGlyph> must be of the 'id' of an existing <speciesReference> in the <model>.
LAYOUT_21009 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021009: If both attributes 'layout:speciesReference' and 'layout:metaidRef' are specified on a <speciesReferenceGlyph> they have to reference the same <speciesReference> in the <model>.
LAYOUT_21010 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021010: The attribute 'layout:speciesGlyph' of a <speciesReferenceGlyph> must be the data type 'SIdRef'.
LAYOUT_21011 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021011: The value of the 'layout:speciesGlyph' attribute of a <speciesReferenceGlyph> must be of the 'id' of an existing <speciesGlyph> element in the <layout>.
LAYOUT_21012 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021012: The attribute 'layout:role' of a <speciesReferenceGlyph> must be of data type 'SpeciesReferenceRole', i.e. it must have one of the following values: substrate, product, sidesubstrate, sideproduct, modifier, activator, inhibitor or undefined.
LAYOUT_21101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021101: A <referenceGlyph> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021102: A <referenceGlyph> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21103 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021103: There may be at most one instance of a <boundingBox> and <curve> object on a <referenceGlyph>.
LAYOUT_21104 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021104: A <referenceGlyph> object must have the required attributes 'layout:id' and 'layout:glyph' and may have the optional attributes 'layout:metaidRef', 'layout:reference' and 'layout:role'.
LAYOUT_21105 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021105: The attribute 'layout:metaidRef' of a <referenceGlyph> must be of the data type 'IDREF'.
LAYOUT_21106 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021106: The value of a 'layout:metaidRef' attribute of a <referenceGlyph> must be of the 'metaid' of an existing element in the <model>.
LAYOUT_21107 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021107: The attribute 'layout:reference' of a <referenceGlyph> must be the data type 'SIdRef'.
LAYOUT_21108 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021108: The value of the 'layout:reference' attribute of a <referenceGlyph> must be of the 'id' of an existing element in the <model>.
LAYOUT_21109 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021109: If both attributes 'layout:reference' and 'layout:metaidRef' are specified on a <referenceGlyph> they have to reference the same element in the <model>.
LAYOUT_21110 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021110: The attribute 'layout:glyph' of a <referenceGlyph> must be the data type 'SIdRef'.
LAYOUT_21111 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021111: The value of the 'layout:glyph' attribute of a <referenceGlyph> must be of the 'id' of an existing <graphicalObject> (or derived) element in the <layout>.
LAYOUT_21112 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021112: The attribute 'layout:role' of a <referenceGlyph> must be the data type 'string'.
LAYOUT_21201 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021201: A <point> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21202 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021202: A <point> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21203 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021203: A <point> object must have the required attributes 'layout:x' and 'layout:y' and may have the optional attributes 'layout:id', and 'layout:z'.
LAYOUT_21204 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021204: The attributes 'layout:x', 'layout:y' and 'layout:z' of a <point> element must be of the data type 'double'.
LAYOUT_21301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021301: A <boundingBox> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021302: A <boundingBox> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21303 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021303: There must be exactly one instance of a <point> and a <dimensions> object on a <boundingBox>.
LAYOUT_21304 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021304: A <boundingBox> object may have the optional attributes 'layout:id'.
LAYOUT_21305 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021305: If the 'layout:z' attribute on a <point> element of a <boundingBox> is not specified, the attribute 'layout:depth' must not be specified.
LAYOUT_21401 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021401: A <curve> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21402 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021402: A <curve> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21403 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021403: There must be exactly one instance of a <listOfCurveSegments> object on a <curve>.
LAYOUT_21404 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021404: No attributes from the Layout namespace are permitted on a <curve>.
LAYOUT_21405 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021405: A <listOfCurveSegments> object may have the optional attributes 'metaid' and 'sboTerm' defined by SBML Level 3 Core.
LAYOUT_21406 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021406: Apart from the general notes and annotation subobjects permitted on all SBML objects, a <listOfCurveSegments> container object may only contain <referenceGlyph> objects.
LAYOUT_21407 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021407: A <listOfCurveSegments> container object may not be empty.
LAYOUT_21501 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021501: A <lineSegment> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21502 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021502: A <lineSegment> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21503 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021503: A <lineSegment> must specify two <point> elements 'start' and 'end'.
LAYOUT_21504 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021504: No attributes from the Layout namespace are permitted on a <lineSegment>.
LAYOUT_21601 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021601: A <cubicBezier> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21602 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021602: A <cubicBezier> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21603 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021603: A <cubicBezier> must specify four <point> elements 'start' 'basePoint1', 'basePoint2' and 'end'.
LAYOUT_21604 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021604: No attributes from the Layout namespace are permitted on a <cubicBezier>.
LAYOUT_21701 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021701: A <dimensions> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
LAYOUT_21702 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021702: A <dimensions> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
LAYOUT_21703 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021703: A <dimensions> object must have the required attributes 'layout:width' and 'layout:height' and may have the optional attributes 'layout:id', and 'layout:depth'.
LAYOUT_21704 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 6021704: The attributes 'layout:width', 'layout:height' and 'layout:depth' of a <dimensions> element must be of the data type 'double'.
LAYOUT_LINK - Static variable in class org.sbml.jsbml.ext.render.director.GlyphCreator
LAYOUT_LINK - Static variable in class org.sbml.jsbml.ext.render.director.LayoutDirector: Constant for use as the key for layout links.
LayoutAlgorithm - Interface in org.sbml.jsbml.ext.render.director: Interface for defining an algorithm to create bounding boxes, dimensions and points missing in the layout.
LayoutBuilder - Interface in org.sbml.jsbml.ext.render.director: LayoutBuilder provides methods to build graphical representations for all glyph types.
LayoutConstants - Class in org.sbml.jsbml.ext.layout: Contains some constants related to the layout package.
LayoutConstants() - Constructor for class org.sbml.jsbml.ext.layout.LayoutConstants
LayoutConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the Layout class.
LayoutConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LayoutConstraints
LayoutDirector - Class in org.sbml.jsbml.ext.render.director: LayoutDirector produces a graphical representation of a layout of an SBMLDocument.
LayoutDirector(File, LayoutBuilder, LayoutAlgorithm) - Constructor for class org.sbml.jsbml.ext.render.director.LayoutDirector
LayoutDirector(Layout, LayoutBuilder, LayoutAlgorithm) - Constructor for class org.sbml.jsbml.ext.render.director.LayoutDirector
LayoutDirector(SBMLDocument, LayoutBuilder, LayoutAlgorithm) - Constructor for class org.sbml.jsbml.ext.render.director.LayoutDirector
LayoutDirector(SBMLDocument, LayoutBuilder, LayoutAlgorithm, int) - Constructor for class org.sbml.jsbml.ext.render.director.LayoutDirector
LayoutFactory<NodeT,ArcT> - Interface in org.sbml.jsbml.ext.render.director: Interface that defines methods to create and return the different types of nodes and arcs.
LayoutModelPlugin - Class in org.sbml.jsbml.ext.layout: The Layout package extends the Model class with the addition of one child element: the listOfLayouts.
LayoutModelPlugin(LayoutModelPlugin) - Constructor for class org.sbml.jsbml.ext.layout.LayoutModelPlugin: Creates a new instance LayoutModelPlugin cloned from the given LayoutModelPlugin.
LayoutModelPlugin(Model) - Constructor for class org.sbml.jsbml.ext.layout.LayoutModelPlugin: Creates a new instance LayoutModelPlugin associate it with the given Model.
LayoutModelPluginConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the LayoutModelPlugin class.
LayoutModelPluginConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LayoutModelPluginConstraints
LayoutParser - Class in org.sbml.jsbml.xml.parsers: Parses the SBML level 2 layout extension package elements and attributes.
LayoutParser() - Constructor for class org.sbml.jsbml.xml.parsers.LayoutParser
leadingZeros(int, int) - Static method in class org.sbml.jsbml.util.StringTools: This method creates a String representation of the given number and inserts as many zero characters as the prefix of this String as needed to result in a String of the given length.
LEFT - org.sbml.jsbml.ext.render.director.SimpleLayoutAlgorithm.RelativePosition
LEFT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LEFT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LEFT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants: RegularExpression Id.
leftBrace - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler: Left parenthesis.
leftBrace - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler: Left parenthesis.
leftChild - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants: Introduced to FBC in version 2: The left child of a logical association rule.
leftQuotationMark - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler: An opening quotation mark.
leftQuotationMark - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler: An opening quotation mark.
length(int, int) - Static method in class org.sbml.jsbml.UnitDefinition: Returns the predefined unit for length.
LENGTH - Static variable in class org.sbml.jsbml.UnitDefinition: Identifier of the (for SBML Level 2) predefined UnitDefinition length.
lengthUnits - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
leq(ASTNode, ASTNode) - Static method in class org.sbml.jsbml.ASTNode: Creates an ASTNode representing less or equal for the two given left and right child.
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
leq(ASTNode, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: Less equal.
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
leq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
leq(ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates an ASTRelationalOperatorNode representing less or equal for the two given left and right child.
leq(ASTNode2, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler: Less equal.
leq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
leq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
leq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
leq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
leq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
LESS - org.sbml.jsbml.ext.fbc.FluxBound.Operation: Deprecated.

less
LESS_EQUAL - org.sbml.jsbml.ext.fbc.FluxBound.Operation: Deprecated.

lessEqual
LETTER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LETTER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants: RegularExpression Id.
level - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
LEVEL_MISMATCH - Static variable in class org.sbml.jsbml.JSBML
LEVEL_MISMATCH_MSG - Static variable in exception org.sbml.jsbml.LevelVersionError: Message to display in cases that two objects do not have identical level attributes.
levelMismatchMessage(SBase, SBase) - Static method in exception org.sbml.jsbml.LevelVersionError: Creates an error message if the level fields of both elements are not identical, or an empty String otherwise.
LevelVersionConverter - Class in org.sbml.jsbml.util.converters
LevelVersionConverter(ValuePair<Integer, Integer>) - Constructor for class org.sbml.jsbml.util.converters.LevelVersionConverter: Creates a converter for which only the target level version matters.
LevelVersionConverter(ValuePair<Integer, Integer>, ValuePair<Integer, Integer>) - Constructor for class org.sbml.jsbml.util.converters.LevelVersionConverter
LevelVersionError - Exception in org.sbml.jsbml: An SBMLError that indicates that associated instances of SBase cannot be combined within the same model due to their differently set Level or Version attribute.
LevelVersionError(int, int) - Constructor for exception org.sbml.jsbml.LevelVersionError
LevelVersionError(String, int, int) - Constructor for exception org.sbml.jsbml.LevelVersionError
LevelVersionError(SBasePlugin, SBase) - Constructor for exception org.sbml.jsbml.LevelVersionError
LevelVersionError(SBase) - Constructor for exception org.sbml.jsbml.LevelVersionError
LevelVersionError(SBase, SBase) - Constructor for exception org.sbml.jsbml.LevelVersionError
lexStateNames - Static variable in class org.sbml.jsbml.math.parser.FormulaParserASTNode2TokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2TokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.math.parser.FormulaParserLL3TokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.math.parser.FormulaParserTokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.text.parser.CobraFormulaParserTokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.text.parser.FormulaParserASTNode2TokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2TokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.text.parser.FormulaParserLL3TokenManager: Lexer state names.
lexStateNames - Static variable in class org.sbml.jsbml.text.parser.FormulaParserTokenManager: Lexer state names.
LibSBMLFormulaCompiler - Class in org.sbml.jsbml.math.compiler
LibSBMLFormulaCompiler - Class in org.sbml.jsbml.util.compilers: This class creates C-like infix formula Strings that represent the content of ASTNodes and try to reproduce the output generated by the LibSBML historical parser (compatible with SBML L1 infix).
LibSBMLFormulaCompiler() - Constructor for class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
LibSBMLFormulaCompiler() - Constructor for class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
LINE_SEGMENT - org.sbml.jsbml.ext.layout.CurveSegment.Type
linear - org.sbml.jsbml.ext.spatial.InterpolationKind
linearGradient - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
LinearGradient - Class in org.sbml.jsbml.ext.render
LinearGradient() - Constructor for class org.sbml.jsbml.ext.render.LinearGradient: Creates an LinearGradient instance
LinearGradient(LinearGradient) - Constructor for class org.sbml.jsbml.ext.render.LinearGradient: Clone constructor
linearGradient_x1 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
linearGradient_x2 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
linearGradient_y1 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
linearGradient_y2 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
linearGradient_z1 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
linearGradient_z2 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
LinearGradientConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the LinearGradient class.
LinearGradientConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LinearGradientConstraints
lineBreak - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler: This is a LaTeX line break.
lineBreak - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler: This is a LaTeX line break.
lineEnding - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
LineEnding - Class in org.sbml.jsbml.ext.render
LineEnding() - Constructor for class org.sbml.jsbml.ext.render.LineEnding: Creates an LineEnding instance
LineEnding(LineEnding) - Constructor for class org.sbml.jsbml.ext.render.LineEnding: Clone constructor
LineEndingConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the LineEnding class.
LineEndingConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LineEndingConstraints
lineSegment - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
LineSegment - Class in org.sbml.jsbml.ext.layout: The LineSegment class consists of the mandatory attribute xsi:type and two child elements of type Point.
LineSegment() - Constructor for class org.sbml.jsbml.ext.layout.LineSegment
LineSegment(int, int) - Constructor for class org.sbml.jsbml.ext.layout.LineSegment
LineSegment(CurveSegment) - Constructor for class org.sbml.jsbml.ext.layout.LineSegment
LineSegment(LineSegment) - Constructor for class org.sbml.jsbml.ext.layout.LineSegment
LineSegmentConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the LineSegment class.
LineSegmentConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LineSegmentConstraints
linkObjectRoleToStyle(Map<String, LocalStyle>, GraphicalObject) - Static method in class org.sbml.jsbml.ext.render.director.RenderProcessor
list_of_elements - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listIterator() - Method in class org.sbml.jsbml.ListOf
listIterator(int) - Method in class org.sbml.jsbml.ListOf
ListOf<T extends SBase> - Class in org.sbml.jsbml: This list implementation is a Java List that extends AbstractSBase.
ListOf() - Constructor for class org.sbml.jsbml.ListOf: Creates a ListOf instance.
ListOf(int, int) - Constructor for class org.sbml.jsbml.ListOf: Creates a ListOf instance from a level and version.
ListOf(String) - Constructor for class org.sbml.jsbml.ListOf: Creates a new ListOf instance with the given id.
ListOf(String, int, int) - Constructor for class org.sbml.jsbml.ListOf: Creates a new ListOf instance.
ListOf(String, String, int, int) - Constructor for class org.sbml.jsbml.ListOf: Creates a new ListOf instance.
ListOf(ListOf<? extends SBase>) - Constructor for class org.sbml.jsbml.ListOf: Creates a ListOf instance from a given ListOf.
ListOf.Type - Enum in org.sbml.jsbml: This enum lists all the possible names of the listXXX components.
listOfAdditionalGraphicalObjects - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfAdjacentDomains - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfAnalyticVolumes - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfBonds - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfChangedMaths - Static variable in class org.sbml.jsbml.ext.req.ReqConstants
listOfColorDefinitions - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listOfCompartmentGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfCompartmentReferences - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfCompartments - org.sbml.jsbml.ListOf.Type
listOfCompartmentTypes - org.sbml.jsbml.ListOf.Type
listOfConstraints - org.sbml.jsbml.ListOf.Type
listOfContainedSpeciesTypes - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfCoordinateComponents - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfCSGNodes - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfCSGObjects - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfCurveSegments - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfDeletions - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
listOfDimensions - Static variable in class org.sbml.jsbml.ext.arrays.ArraysConstants
listOfDomains - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfDomainTypes - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfDynElements - Static variable in class org.sbml.jsbml.ext.dyn.DynConstants
listOfElements - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listOfEventAssignments - org.sbml.jsbml.ListOf.Type
listOfEvents - org.sbml.jsbml.ListOf.Type
listOfExternalModelDefinitions - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
listOfFluxBounds - org.sbml.jsbml.ext.fbc.FBCList
listOfFluxBounds - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
listOfFluxes - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants: old name of the listOfFluxObjectives.
listOfFluxObjectives - org.sbml.jsbml.ext.fbc.FBCList
listOfFluxObjectives - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
listOfFunctionDefinitions - org.sbml.jsbml.ListOf.Type
listOfFunctionTerms - org.sbml.jsbml.ext.qual.QualList
listOfFunctionTerms - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
listOfGeneProducts - org.sbml.jsbml.ext.fbc.FBCList: Introduced in FBC version 2.
listOfGeneProducts - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
listOfGeneralGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfGeometryDefinitions - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfGlobalRenderInformation - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
ListOfGlobalRenderInformation - Class in org.sbml.jsbml.ext.render: Derives from the ListOf class and contains one or more objects of type GlobalRenderInformation.
ListOfGlobalRenderInformation() - Constructor for class org.sbml.jsbml.ext.render.ListOfGlobalRenderInformation: Creates a new ListOfGlobalRenderInformation instance
ListOfGlobalRenderInformation(int, int) - Constructor for class org.sbml.jsbml.ext.render.ListOfGlobalRenderInformation: Creates a new ListOfGlobalRenderInformation instance with a level and version.
ListOfGlobalRenderInformation(ListOfGlobalRenderInformation) - Constructor for class org.sbml.jsbml.ext.render.ListOfGlobalRenderInformation: Clone constructor
listOfGradientDefinitions - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listOfGradientStops - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listOfGroups - Static variable in class org.sbml.jsbml.ext.groups.GroupsConstants
listOfIndices - Static variable in class org.sbml.jsbml.ext.arrays.ArraysConstants
listOfInitialAssignments - org.sbml.jsbml.ListOf.Type
listOfInputs - org.sbml.jsbml.ext.qual.QualList
listOfInputs - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
listOfInSpeciesTypeBonds - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfInteriorPoints - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfLayouts - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfLineEndings - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listOfLineSegments - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfLocalParameters - org.sbml.jsbml.ListOf.Type
listOfLocalRenderInformation - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
ListOfLocalRenderInformation - Class in org.sbml.jsbml.ext.render: Derives from the ListOf class and contains one or more objects of type LocalRenderInformation.
ListOfLocalRenderInformation() - Constructor for class org.sbml.jsbml.ext.render.ListOfLocalRenderInformation: Creates a new ListOfLocalRenderInformation instance.
ListOfLocalRenderInformation(int, int) - Constructor for class org.sbml.jsbml.ext.render.ListOfLocalRenderInformation: Creates a new ListOfLocalRenderInformation instance with a level and version.
ListOfLocalRenderInformation(ListOfLocalRenderInformation) - Constructor for class org.sbml.jsbml.ext.render.ListOfLocalRenderInformation: Clone constructor
listOfLocalStyles - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
ListOfMemberConstraint - Class in org.sbml.jsbml.ext.groups: Deprecated.
This class was removed from the specifications as of version 0.7 (2015-11-24) as no software wanted to implement support for it. It might be added back in a future version of the specifications if somebody want to implement it.
ListOfMemberConstraint() - Constructor for class org.sbml.jsbml.ext.groups.ListOfMemberConstraint: Deprecated.
ListOfMemberConstraint(int, int) - Constructor for class org.sbml.jsbml.ext.groups.ListOfMemberConstraint: Deprecated.
ListOfMemberConstraint(ListOfMemberConstraint) - Constructor for class org.sbml.jsbml.ext.groups.ListOfMemberConstraint: Deprecated.
listOfMemberConstraints - Static variable in class org.sbml.jsbml.ext.groups.GroupsConstants
listOfMembers - Static variable in class org.sbml.jsbml.ext.groups.GroupsConstants
ListOfMembers - Class in org.sbml.jsbml.ext.groups
ListOfMembers() - Constructor for class org.sbml.jsbml.ext.groups.ListOfMembers: Creates a new instance of ListOfMembers.
ListOfMembers(int, int) - Constructor for class org.sbml.jsbml.ext.groups.ListOfMembers: Creates a new instance of ListOfMembers.
ListOfMembers(ListOfMembers) - Constructor for class org.sbml.jsbml.ext.groups.ListOfMembers: Creates a new instance of ListOfMembers, cloned from the given listOf.
listOfModelDefinitions - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
listOfModifiers - org.sbml.jsbml.ListOf.Type
listOfObjectives - org.sbml.jsbml.ext.fbc.FBCList
listOfObjectives - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
ListOfObjectives - Class in org.sbml.jsbml.ext.fbc: ListOfObjectives adds an additional required attribute: 'activeObjective'.
ListOfObjectives() - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives: Creates a new ListOfObjectives instance.
ListOfObjectives(int, int) - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives: Creates a new ListOfObjectives instance.
ListOfObjectives(ListOfObjectives) - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives: Creates a new ListOfObjectives instance.
ListOfObjectives(ListOf<Objective>) - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives: Creates a new ListOfObjectives instance.
listOfOrdinalMappings - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfOutputs - org.sbml.jsbml.ext.qual.QualList
listOfOutputs - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
listOfOutwardBindingSites - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfParameters - org.sbml.jsbml.ListOf.Type
listOfParametricObjects - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfPorts - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
listOfPossibleSpeciesFeatureValues - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfPossibleValues - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfProducts - org.sbml.jsbml.ListOf.Type
listOfQualitativeSpecies - org.sbml.jsbml.ext.qual.QualList
listOfQualitativeSpecies - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
listOfReactants - org.sbml.jsbml.ListOf.Type
listOfReactionGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfReactions - org.sbml.jsbml.ListOf.Type
listOfReferenceGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
ListOfRenderInformation<T extends RenderInformationBase> - Class in org.sbml.jsbml.ext.render: Derives from the ListOf class and contains one or more objects of type RenderInformationBase.
ListOfRenderInformation() - Constructor for class org.sbml.jsbml.ext.render.ListOfRenderInformation: Creates a new ListOfRenderInformation instance
ListOfRenderInformation(int, int) - Constructor for class org.sbml.jsbml.ext.render.ListOfRenderInformation: Creates a new ListOfRenderInformation instance with a level and version.
ListOfRenderInformation(ListOfRenderInformation<?>) - Constructor for class org.sbml.jsbml.ext.render.ListOfRenderInformation: Clone constructor
listOfReplacedElements - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
listOfRules - org.sbml.jsbml.ListOf.Type
listOfSampledFields - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfSampledVolumes - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfSelectors - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpatialComponents - Static variable in class org.sbml.jsbml.ext.dyn.DynConstants
listOfSpatialPoints - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
listOfSpecies - org.sbml.jsbml.ListOf.Type
listOfSpeciesFeatureChanges - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
ListOfSpeciesFeatureContent - Interface in org.sbml.jsbml.ext.multi.util: Represents elements that can go into the combined ListOfSpeciesFeatures, meaning SpeciesFeature and SubListOfSpeciesFeature.
listOfSpeciesFeatures - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesFeatureTypes - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesFeatureValues - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfSpeciesReferenceGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfSpeciesTypeComponentIndexes - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesTypeComponentMapInProducts - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesTypeInstances - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesTypes - org.sbml.jsbml.ListOf.Type
listOfSpeciesTypes - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSpeciesTypeStates - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfStateFeatureInstances - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfStateFeatures - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfStateFeatureValues - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfStyles - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
listOfSubGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfSubListOfSpeciesFeatures - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfSubmodels - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
listOfSymbolicValues - org.sbml.jsbml.ext.qual.QualList
listOfTextGlyphs - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
listOfTransitions - org.sbml.jsbml.ext.qual.QualList
listOfTransitions - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
listOfUnboundBindingSites - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
listOfUncertainties - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
listOfUncertParameters - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
listOfUnitDefinitions - org.sbml.jsbml.ListOf.Type
listOfUnits - org.sbml.jsbml.ListOf.Type
listOfUnits - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
ListOfWithName<T extends SBase> - Class in org.sbml.jsbml.util: Deprecated.
since JSBML 1.2 and the introduction of ListOf.setOtherListName(String), this class is not necessary any more.
ListOfWithName(int, int, String) - Constructor for class org.sbml.jsbml.util.ListOfWithName: Deprecated.
ListOfWithName(String) - Constructor for class org.sbml.jsbml.util.ListOfWithName: Deprecated.
ListOfWithName(ListOfWithName<? extends SBase>) - Constructor for class org.sbml.jsbml.util.ListOfWithName: Deprecated.
LITER - org.sbml.jsbml.Unit.Kind: Deprecated.
use Unit.Kind.LITRE instead.
LITRE - org.sbml.jsbml.Unit.Kind: The litre unit.
ln(double) - Static method in class org.sbml.jsbml.util.Maths: Computes the ln of n
ln(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
ln(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
ln(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
ln(ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: Natural logarithm.
ln(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
ln(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
ln(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
ln(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
ln(ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
ln(ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
ln(ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler: Natural logarithm.
ln(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
ln(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
ln(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
ln(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
ln(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
loadClasses(String, Map<String, Class<? extends T>>) - Static method in class org.sbml.jsbml.JSBML: Loads Properties from a configuration file with the given path assuming that all values represent class names.
loadConstraints(Class<?>) - Method in class org.sbml.jsbml.validator.offline.ValidationContext: Loads the constraints to validate a Object from the class.
loadConstraints(Class<?>, int, int) - Method in class org.sbml.jsbml.validator.offline.ValidationContext: Loads the constraints and sets the level and version.
loadConstraints(Class<?>, int, int, SBMLValidator.CHECK_CATEGORY[]) - Method in class org.sbml.jsbml.validator.offline.ValidationContext: Loads the constraints to validate a Object from the given class.
loadConstraintsForAttribute(Class<?>, String) - Method in class org.sbml.jsbml.validator.offline.ValidationContext: Validates a single attribute.
LocalParameter - Class in org.sbml.jsbml: A local parameter can only be used to specify a constant within a KineticLaw.
LocalParameter() - Constructor for class org.sbml.jsbml.LocalParameter: Creates a new instance of LocalParameter.
LocalParameter(int, int) - Constructor for class org.sbml.jsbml.LocalParameter
LocalParameter(String) - Constructor for class org.sbml.jsbml.LocalParameter: Creates a new instance of LocalParameter with the given identifier.
LocalParameter(String, int, int) - Constructor for class org.sbml.jsbml.LocalParameter
LocalParameter(String, String, int, int) - Constructor for class org.sbml.jsbml.LocalParameter
LocalParameter(LocalParameter) - Constructor for class org.sbml.jsbml.LocalParameter
LocalParameter(Parameter) - Constructor for class org.sbml.jsbml.LocalParameter: Creates a new local parameter that will have the same properties than the given global parameter.
LocalParameterConstraints - Class in org.sbml.jsbml.validator.offline.constraints
LocalParameterConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LocalParameterConstraints
LocalParameterShadowsId - org.sbml.jsbml.SBMLException.Code: Local parameters defined in a kinetic law shadow global parameters
localRenderInformation - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
LocalRenderInformation - Class in org.sbml.jsbml.ext.render
LocalRenderInformation() - Constructor for class org.sbml.jsbml.ext.render.LocalRenderInformation: Creates an LocalRenderInformation instance
LocalRenderInformation(int, int) - Constructor for class org.sbml.jsbml.ext.render.LocalRenderInformation: Creates a LocalRenderInformation instance with a level and version.
LocalRenderInformation(String) - Constructor for class org.sbml.jsbml.ext.render.LocalRenderInformation: Creates a LocalRenderInformation instance with an id.
LocalRenderInformation(String, int, int) - Constructor for class org.sbml.jsbml.ext.render.LocalRenderInformation: Creates a LocalRenderInformation instance with an id, level, and version.
LocalRenderInformation(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.render.LocalRenderInformation: Creates a LocalRenderInformation instance with an id, name, level, and version.
LocalRenderInformation(LocalRenderInformation) - Constructor for class org.sbml.jsbml.ext.render.LocalRenderInformation: Clone constructor
LocalRenderInformationConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the LocalRenderInformation class.
LocalRenderInformationConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LocalRenderInformationConstraints
localStyle - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
LocalStyle - Class in org.sbml.jsbml.ext.render
LocalStyle() - Constructor for class org.sbml.jsbml.ext.render.LocalStyle: Creates a new LocalStyle instance
LocalStyle(int, int, RenderGroup) - Constructor for class org.sbml.jsbml.ext.render.LocalStyle: Creates a LocalStyle instance with a level and version.
LocalStyle(String, int, int, RenderGroup) - Constructor for class org.sbml.jsbml.ext.render.LocalStyle: Creates a LocalStyle instance with an id, name, level, and version.
LocalStyle(LocalStyle) - Constructor for class org.sbml.jsbml.ext.render.LocalStyle: Creates a new LocalStyle instance, cloned from the given object.
LocalStyle(RenderGroup) - Constructor for class org.sbml.jsbml.ext.render.LocalStyle: Creates a LocalStyle instance with a group
LocalStyleConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the LocalStyle class.
LocalStyleConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.LocalStyleConstraints
location - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
log(double) - Static method in class org.sbml.jsbml.util.Maths: Computes the log of n to the base 10
log(double, double) - Static method in class org.sbml.jsbml.util.Maths: Computes the logarithm of a number to a giving base.
log(Priority, String) - Method in class org.sbml.jsbml.xml.stax.XMLLogger
log(ASTNode) - Static method in class org.sbml.jsbml.ASTNode: Creates an ASTNode representing a logarithm to base 10 of the given value.
log(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
log(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
log(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
log(ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: Logarithm of the given value to base 10.
log(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
log(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
log(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
log(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
log(ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
log(ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
log(ASTNode, ASTNode) - Static method in class org.sbml.jsbml.ASTNode: Creates an ASTNode that represents the logarithm function with the given base and value.
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
log(ASTNode, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: Logarithm of the given value to the given base.
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
log(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
log(ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates an ASTLogarithmNode representing a logarithm to base 10 of the given value.
log(ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler: Logarithm of the given value to base 10.
log(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
log(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
log(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
log(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
log(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
log(ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates an ASTLogarithmNode that represents the logarithm function with the given base and value.
log(ASTNode2, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler: Logarithm of the given value to the given base.
log(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
log(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
log(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
log(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
log(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
LOG - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
LOG - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants: RegularExpression Id.
LOG_IS_LN - org.sbml.jsbml.text.parser.FormulaParserLL3.LOG_BEHAVIOR: 'log' is interpreted as the natural logarithm 'ln' as it was defined in SBML Level 1, Appendix C, table 6.
LOG_IS_LOG10 - org.sbml.jsbml.text.parser.FormulaParserLL3.LOG_BEHAVIOR: 'log(x)' is interpreted as 'log10(x)' or 'log(10, x)'
LOG_IS_LOG2 - org.sbml.jsbml.text.parser.FormulaParserLL3.LOG_BEHAVIOR: 'log(x)' is interpreted as 'log(2, x)'
LOG_IS_NOT_ALLOWED - org.sbml.jsbml.text.parser.FormulaParserLL3.LOG_BEHAVIOR: 'log(x)' is not allowed and a ParseException will be returned if it is encountered.
logError(ValidationContext, int, SBase, String...) - Static method in class org.sbml.jsbml.validator.offline.constraints.ValidationConstraint: Logs a new SBMLError into a LoggingValidationContext.
logErrorWithPostmessageCode(ValidationContext, int, String, SBase, String...) - Static method in class org.sbml.jsbml.validator.offline.constraints.ValidationConstraint: Logs a new SBMLError into a LoggingValidationContext.
logFailure(int, Object) - Method in class org.sbml.jsbml.validator.offline.LoggingValidationContext: Logs an SBMLError into the SBMLErrorLog.
logFailure(SBMLError) - Method in class org.sbml.jsbml.validator.offline.LoggingValidationContext: Logs an SBMLError into the SBMLErrorLog.
LoggingValidationContext - Class in org.sbml.jsbml.validator.offline: A subclass of ValidationContext which implements the ValidationListener interface to track his own validation process.
LoggingValidationContext(int, int) - Constructor for class org.sbml.jsbml.validator.offline.LoggingValidationContext: Creates a new LoggingValidationContext instance.
LoggingValidationContext(int, int, AnyConstraint<Object>, Set<SBMLValidator.CHECK_CATEGORY>) - Constructor for class org.sbml.jsbml.validator.offline.LoggingValidationContext: Creates a new LoggingValidationContext instance.
LOGICAL_AND - org.sbml.jsbml.ASTNode.Type
LOGICAL_IMPLIES - org.sbml.jsbml.ASTNode.Type: In classical logic, the compound 'p implies q' (p→q) is logically equivalent to the negative compound: not both p and not q.
LOGICAL_NOT - org.sbml.jsbml.ASTNode.Type
LOGICAL_OR - org.sbml.jsbml.ASTNode.Type
LOGICAL_XOR - org.sbml.jsbml.ASTNode.Type
LogicalOperator - Class in org.sbml.jsbml.ext.fbc: Represents a collection of genes in a logical expression.
LogicalOperator() - Constructor for class org.sbml.jsbml.ext.fbc.LogicalOperator: Creates a new LogicalOperator instance.
LogicalOperator(int, int) - Constructor for class org.sbml.jsbml.ext.fbc.LogicalOperator: Creates a new LogicalOperator instance.
LogicalOperator(LogicalOperator) - Constructor for class org.sbml.jsbml.ext.fbc.LogicalOperator: Creates a new LogicalOperator instance.
logScale - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
longtableHead(String, String, String) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler: Creates a head for a longtable in LaTeX.
longtableHead(String, String, String) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler: Creates a head for a longtable in LaTeX.
LOWER_BOUND - Static variable in class org.sbml.jsbml.ext.fbc.CobraConstants
lowerFluxBound - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants: Introduced to FBC in version 2.
lt(String, ASTNode) - Static method in class org.sbml.jsbml.ASTNode: Creates an ASTNode that performs a less than comparison between a variable and another ASTNode.
lt(String, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates an ASTRelationalOperatorNode that performs a less than comparison between a variable and another ASTNode2.
lt(ASTNode, ASTNode) - Static method in class org.sbml.jsbml.ASTNode: Creates an ASTNode that performs a less than comparison between two ASTNodes.
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
lt(ASTNode, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: Less than.
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
lt(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
lt(ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates a ASTRelationalOperatorNode that performs a less than comparison between two ASTNode2s.
lt(ASTNode2, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler: Less than.
lt(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
lt(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
lt(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
lt(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
lt(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
LUMEN - org.sbml.jsbml.Unit.Kind: The lumen unit.
LUX - org.sbml.jsbml.Unit.Kind: The lux unit.

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