A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

W

WARNING - org.sbml.jsbml.SBMLError.SEVERITY

WARNING - org.sbml.jsbml.SBMLException.Type

WATT - org.sbml.jsbml.Unit.Kind

The watt unit.

WEBER - org.sbml.jsbml.Unit.Kind

The weber unit.

wedge - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler

wedge - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler

weightedSum(double, Point, double, Point) - Static method in class org.sbml.jsbml.ext.render.director.Geometry

Adds the given points a and b, weighted by the respective weight, i.e

width - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants

width - Static variable in class org.sbml.jsbml.ext.render.RenderConstants

willValidate(AnyConstraint<?>, Object) - Method in class org.sbml.jsbml.validator.offline.ValidationContext

Allows a ValidationListener to perform some operation before a constraint is called.

willValidate(ValidationContext, AnyConstraint<?>, Object) - Method in class org.sbml.jsbml.validator.offline.LoggingValidationContext

willValidate(ValidationContext, AnyConstraint<?>, Object) - Method in interface org.sbml.jsbml.validator.offline.ValidationListener

Invoked before the constraint will validate the object.

write(SBMLDocument, File) - Method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File) - Method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the SBMLDocument into a File.

write(SBMLDocument, File, char, short) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File, char, short) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File, String, String) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File, String, String) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File, String, String) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the SBMLDocument into a File.

write(SBMLDocument, File, String, String, char, short) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, File, String, String, char, short) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to a File.

write(SBMLDocument, OutputStream) - Method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to the OutputStream.

write(SBMLDocument, OutputStream) - Method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to the OutputStream.

write(SBMLDocument, OutputStream) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the SBMLDocument into an OutputStream.

write(SBMLDocument, OutputStream, char, short) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to the OutputStream.

write(SBMLDocument, OutputStream, char, short) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to the OutputStream.

write(SBMLDocument, OutputStream, String, String) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to the OutputStream.

write(SBMLDocument, OutputStream, String, String) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to the OutputStream.

write(SBMLDocument, OutputStream, String, String) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the XML representation of an SBMLDocument into an OutputStream.

write(SBMLDocument, OutputStream, String, String, char, short) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to the OutputStream.

write(SBMLDocument, OutputStream, String, String, char, short) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to the OutputStream.

write(SBMLDocument, String) - Method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String) - Method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the XML representation of an SBMLDocument in a SBML file.

write(SBMLDocument, String, char, short) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String, char, short) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String, String, String) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String, String, String) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String, String, String) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the XML representation of an SBMLDocument in a SBML file.

write(SBMLDocument, String, String, String, char, short) - Static method in class org.sbml.jsbml.SBMLWriter

Writes the given SBMLDocument to file name.

write(SBMLDocument, String, String, String, char, short) - Static method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBMLDocument to file name.

write(XMLNode) - Method in class org.sbml.jsbml.xml.parsers.XMLNodeWriter

write(Node, OutputStream, boolean) - Method in class org.sbml.jsbml.util.JAXPFacade

Writes an XML DOM node to the specified byte stream.

write(Node, OutputStream, boolean) - Method in interface org.sbml.jsbml.util.NodeWriter

Writes an XML DOM node to a byte stream.

write(Node, OutputStream, StreamSource, boolean) - Method in class org.sbml.jsbml.util.JAXPFacade

Writes an XML DOM node to the specified byte stream, using a javax.xml.transform.Transformer instance created from streamSource.

write(Node, Writer, boolean) - Method in class org.sbml.jsbml.util.JAXPFacade

Writes an XML DOM node to the specified character stream.

write(Node, Writer, boolean) - Method in interface org.sbml.jsbml.util.NodeWriter

Writes an XML DOM node to a character stream.

write(Node, Writer, StreamSource, boolean) - Static method in class org.sbml.jsbml.util.JAXPFacade

Writes an XML DOM node to the specified character stream, using a javax.xml.transform.Transformer instance created from streamSource.

writeAnnotation(SBase) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the Annotation of an SBase element to an XML String.

writeAnnotation(SBase, XMLNode) - Method in interface org.sbml.jsbml.xml.parsers.AnnotationWriter

Writes the annotation of the given SBase object into the given XMLNode.

writeAnnotation(SBase, XMLNode) - Method in class org.sbml.jsbml.xml.parsers.SBMLRDFAnnotationParser

writeAttributes(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.AbstractReaderWriter

writeAttributes(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.LayoutParser

writeAttributes(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.MathMLParser

Deprecated.

writeAttributes(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.SBMLCoreParser

writeAttributes(SBMLObjectForXML, Object) - Method in interface org.sbml.jsbml.xml.parsers.WritingParser

Adds the XML attributes of the sbmlElementToWrite to the attributes HashMap of the xmlObject.

writeCharacters(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.AbstractReaderWriter

writeCharacters(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.LayoutParser

writeCharacters(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.MathMLParser

Deprecated.

writeCharacters(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.RenderParser

writeCharacters(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.SBMLCoreParser

writeCharacters(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.SpatialParser

writeCharacters(SBMLObjectForXML, Object) - Method in interface org.sbml.jsbml.xml.parsers.WritingParser

Sets the characters of xmlObject depending on the sbml element to write.

writeCobraNotes(SBase, Properties) - Static method in class org.sbml.jsbml.util.CobraUtil

Deletes the notes of the given SBase element and writes the content of the Properties object to the notes of the SBase.

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.AbstractReaderWriter

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.ArraysParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.CompParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.DistribParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.FBCParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.L3LayoutParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.LayoutParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.MathMLParser

Deprecated.

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.MultiParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.QualParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.ReqParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.SBMLCoreParser

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.SpatialParser

writeElement(SBMLObjectForXML, Object) - Method in interface org.sbml.jsbml.xml.parsers.WritingParser

Sets the name of xmlObject (if it is not set) to the element name of sbmlElementToWrite.

writeMathMLToString(ASTNode) - Static method in class org.sbml.jsbml.JSBML

Writes the given ASTNode (and its children) to a string as MathML, and returns the string.

writeNamespaces(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.AbstractReaderWriter

writeNamespaces(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.LayoutParser

writeNamespaces(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.MathMLParser

Deprecated.

writeNamespaces(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.SBMLCoreParser

writeNamespaces(SBMLObjectForXML, Object) - Method in interface org.sbml.jsbml.xml.parsers.WritingParser

Sets the namespace of xmlObject (if it is not set) to the namespace of sbmlElementToWrite.

writeSBML(SBMLDocument, File) - Method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to a File.

writeSBML(SBMLDocument, File) - Method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to a File.

writeSBML(SBMLDocument, String) - Static method in class org.sbml.jsbml.JSBML

Writes the XML representation of an SBML document to a file.

writeSBML(T, String) - Method in interface org.sbml.jsbml.SBMLOutputConverter

This method is identical to the method SBMLOutputConverter.writeSBML(Object, String, String, String), but without the option to pass the program's name or version to the writer.

writeSBML(T, String, String, String) - Method in interface org.sbml.jsbml.SBMLOutputConverter

Writes the given model (in which format it might be given) to an SBML file as specified by the given filename and returns true if this operation could be successfully executed, false otherwise.

writeSBMLToFile(SBMLDocument, String) - Method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to file name.

writeSBMLToFile(SBMLDocument, String) - Method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to file name.

writeSBMLToString(SBMLDocument) - Static method in class org.sbml.jsbml.JSBML

Writes the given SBML document to an in-memory string.

writeSBMLToString(SBMLDocument) - Method in class org.sbml.jsbml.SBMLWriter

Writes the given SBML document to an in-memory String and returns it.

writeSBMLToString(SBMLDocument) - Method in class org.sbml.jsbml.TidySBMLWriter

Writes the given SBML document to an in-memory String and returns it.

writeSBMLToString(SBMLDocument) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the given SBMLDocument to an in-memory XML String.

writeSBMLToString(SBMLDocument, String, String) - Method in class org.sbml.jsbml.xml.stax.SBMLWriter

Writes the given SBMLDocument to an in-memory XML String.

writeXMLAttributes() - Method in class org.sbml.jsbml.AbstractMathContainer

writeXMLAttributes() - Method in class org.sbml.jsbml.AbstractSBase

writeXMLAttributes() - Method in class org.sbml.jsbml.Compartment

writeXMLAttributes() - Method in class org.sbml.jsbml.Event

writeXMLAttributes() - Method in class org.sbml.jsbml.EventAssignment

writeXMLAttributes() - Method in class org.sbml.jsbml.ExplicitRule

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.AbstractASTNodePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.AbstractSBasePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.arrays.Dimension

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.arrays.Index

writeXMLAttributes() - Method in interface org.sbml.jsbml.ext.ASTNodePlugin

Returns a Map containing the XML attributes of this object.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.ReplacedBy

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.comp.Submodel

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.distrib.AbstractDistribSBase

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.distrib.UncertParameter

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.distrib.UncertSpan

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.dyn.DynElement

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.dyn.DynSBasePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.GeneProduct

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.GeneProductAssociation

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.GeneProductRef

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.Objective

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.groups.Group

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.groups.GroupsModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint

Deprecated.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.groups.ListOfMembers

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.groups.Member

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.groups.MemberConstraint

Deprecated.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.BoundingBox

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.CompartmentGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.CurveSegment

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.Dimensions

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.GraphicalObject

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.Layout

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.LayoutModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.Point

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.SpeciesGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.layout.TextGlyph

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.CompartmentReference

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.MultiModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.MultiSimpleSpeciesReferencePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.PossibleSpeciesFeatureValue

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureValue

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.multi.SubListOfSpeciesFeature

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.qual.FunctionTerm

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.qual.Input

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.qual.Output

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.qual.Transition

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.AbstractRenderPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.ColorDefinition

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.DefaultValues

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.Ellipse

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.GradientBase

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.GradientStop

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.Image

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.LinearGradient

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.LineEnding

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.ListOfRenderInformation

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.LocalStyle

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RadialGradient

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.Rectangle

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderCurve

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderCurveSegment

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderGraphicalObjectPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderGroup

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.RenderPoint

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.Style

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.Text

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.render.Transformation

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.req.ChangedMath

writeXMLAttributes() - Method in interface org.sbml.jsbml.ext.SBasePlugin

Returns a Map containing the XML attributes of this object.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.AdvectionCoefficient

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.Boundary

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CoordinateReference

Deprecated.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGPrimitive

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.Domain

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.DomainType

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.Geometry

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.GeometryDefinition

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.ParameterType

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.PolygonObject

Deprecated.

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SampledField

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.SpatialSpeciesPlugin

writeXMLAttributes() - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent

writeXMLAttributes() - Method in class org.sbml.jsbml.InitialAssignment

writeXMLAttributes() - Method in class org.sbml.jsbml.KineticLaw

writeXMLAttributes() - Method in class org.sbml.jsbml.LocalParameter

writeXMLAttributes() - Method in class org.sbml.jsbml.Model

writeXMLAttributes() - Method in class org.sbml.jsbml.Parameter

writeXMLAttributes() - Method in class org.sbml.jsbml.Reaction

writeXMLAttributes() - Method in interface org.sbml.jsbml.SBase

Returns a map with all the attributes of this SBase that need to be written out in XML.

writeXMLAttributes() - Method in class org.sbml.jsbml.SBMLDocument

writeXMLAttributes() - Method in class org.sbml.jsbml.SimpleSpeciesReference

writeXMLAttributes() - Method in class org.sbml.jsbml.Species

writeXMLAttributes() - Method in class org.sbml.jsbml.SpeciesReference

writeXMLAttributes() - Method in class org.sbml.jsbml.Trigger

writeXMLAttributes() - Method in class org.sbml.jsbml.Unit

WritingParser - Interface in org.sbml.jsbml.xml.parsers

The interface to implement for a parser which writes a SBML file.

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