| Interface | Description |
|---|---|
| DocumentFactory |
* An interface for XML DOM document factories.
|
| IdManager |
Manages an id namespace.
|
| NodeWriter |
A writer for XML DOM nodes.
|
| ProgressListener |
The listener interface for receiving progress events.
|
| SAX2Parser |
An interface for XML SAX2 parsers.
|
| TreeNodeChangeListener |
A listener interface that allows applications to get notified if the state of
any
TreeNode object changes. |
| TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
| Class | Description |
|---|---|
| CobraUtil |
Contains some useful methods to manipulate 'COBRA SBML'
|
| Detail | |
| JAXPFacade |
A convenient Facade to parse and write byte and character streams with
XML content using the interfaces and classes defined by the JAXP
specification.
|
| ListOfWithName<T extends SBase> | Deprecated.
since JSBML 1.2 and the introduction of
ListOf.setOtherListName(String), this class is not necessary any more. |
| Maths |
Provides several static methods for mathematical operations such
as faculty, logarithms and several trigonometric functions, which are not
part of standard Java, but necessary to evaluate the content of SBML files.
|
| Message | |
| ModelBuilder |
This class provides a collection of convenient methods to create SBML models
and documents.
|
| Option |
Stores the options sent by the SBML online validator.
|
| PackageDisabler | |
| Pair<L,V> |
A general implementation of a 2-tuple, i.e., two arbitrary objects.
|
| ResourceManager |
A
ResourceManager avoids loading instances of ResourceBundle
multiple times by keeping these in a Map data structure. |
| SBMLtools | |
| SimpleTreeNodeChangeListener |
This very simple implementation of an
TreeNodeChangeListener writes
all the events to the standard out stream. |
| StringTools |
This class provides a collection of convenient methods for manipulating
Strings.
|
| SubModel |
Generates a sub-
Model containing the elements passed as argument and all
the necessary dependencies. |
| TreeNodeAdapter |
This class is a wrapper element for any
Object that should be linked
into a tree data structure as represented by AbstractTreeNode, but
that might by itself not be an instance of TreeNode, i.e., not
compatible with the remaining tree data structure. |
| TreeNodeChangeEvent |
This event tells an
TreeNodeChangeListener which values have been
changed in an SBase and also provides the old and the new value. |
| TreeNodeRemovedEvent |
A special
EventObject to notify a TreeNodeChangeListener
about a removed node and its previous position within the tree. |
| ValuePair<L extends java.lang.Comparable<? super L>,V extends java.lang.Comparable<? super V>> |
A pair of two values with type parameters.
|
| XMLResourceBundleControl |
This class provides the necessary functionality to load a
ResourceBundle from an XML formatted file (for the specification of
the document see Properties). |
| Error | Description |
|---|---|
| NotImplementedException |
This kind of
Exception indicates currently missing functionality in
JSBML. |
