Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext |
The base package for all SBML extensions.
|
org.sbml.jsbml.ext.arrays | |
org.sbml.jsbml.ext.comp |
Provides classes for the
Hierarchical Model Composition package.
|
org.sbml.jsbml.ext.distrib | |
org.sbml.jsbml.ext.dyn |
Provides classes for the
Dynamic Structures package.
|
org.sbml.jsbml.ext.fbc |
Provides classes for the
Flux Balance Constraints package (FBC).
|
org.sbml.jsbml.ext.groups |
Provides classes for the Groups
package.
|
org.sbml.jsbml.ext.layout |
Provides classes for the Layout
package.
|
org.sbml.jsbml.ext.multi |
Provides classes for the Multi package.
|
org.sbml.jsbml.ext.multi.util | |
org.sbml.jsbml.ext.qual |
Provides classes for the Qualitative Models package.
|
org.sbml.jsbml.ext.render |
Provides classes for the render package, see the specification at sbml.org.
|
org.sbml.jsbml.ext.req | |
org.sbml.jsbml.ext.spatial |
Provides classes for the
Spatial Geometries and Processes package.
|
org.sbml.jsbml.math | |
org.sbml.jsbml.math.compiler | |
org.sbml.jsbml.util |
A collection of handy utilities when working with JSBML classes,
such as classes for String manipulation or mathematical operations.
|
org.sbml.jsbml.util.compilers |
The classes in this package can be used to evaluate the information
represented by abstract syntax trees (ASTNode objects).
|
org.sbml.jsbml.util.converters | |
org.sbml.jsbml.validator.offline |
Provides classes to validate any kind of object offline.
|
org.sbml.jsbml.validator.offline.constraints.helper | |
org.sbml.jsbml.xml |
This package provides classes and methods to deal with SBML in form of XML
elements, i.e., here you can find parsers and writers for SBML and also
elements to define XML nodes to be used for notes or annotations.
|
org.sbml.jsbml.xml.stax |
Contains classes that use the Streaming API for XML (StAX)
to read or write an SBML file.
|
Class | Description |
---|---|
Detail | |
IdManager |
Manages an id namespace.
|
Message | |
Option |
Stores the options sent by the SBML online validator.
|
ProgressListener |
The listener interface for receiving progress events.
|
TreeNodeChangeListener |
A listener interface that allows applications to get notified if the state of
any
TreeNode object changes. |
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
ValuePair |
A pair of two values with type parameters.
|
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
IdManager |
Manages an id namespace.
|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
IdManager |
Manages an id namespace.
|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
IdManager |
Manages an id namespace.
|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeChangeListener |
A listener interface that allows applications to get notified if the state of
any
TreeNode object changes. |
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
StringTools |
This class provides a collection of convenient methods for manipulating
Strings.
|
Class | Description |
---|---|
DocumentFactory |
* An interface for XML DOM document factories.
|
JAXPFacade |
A convenient Facade to parse and write byte and character streams with
XML content using the interfaces and classes defined by the JAXP
specification.
|
ListOfWithName |
Deprecated.
since JSBML 1.2 and the introduction of
ListOf.setOtherListName(String) , this class is not necessary any more. |
NodeWriter |
A writer for XML DOM nodes.
|
Pair |
A general implementation of a 2-tuple, i.e., two arbitrary objects.
|
SAX2Parser |
An interface for XML SAX2 parsers.
|
TreeNodeAdapter |
This class is a wrapper element for any
Object that should be linked
into a tree data structure as represented by AbstractTreeNode , but
that might by itself not be an instance of TreeNode , i.e., not
compatible with the remaining tree data structure. |
TreeNodeChangeEvent |
This event tells an
TreeNodeChangeListener which values have been
changed in an SBase and also provides the old and the new value. |
TreeNodeChangeListener |
A listener interface that allows applications to get notified if the state of
any
TreeNode object changes. |
TreeNodeRemovedEvent |
A special
EventObject to notify a TreeNodeChangeListener
about a removed node and its previous position within the tree. |
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
ValuePair |
A pair of two values with type parameters.
|
Class | Description |
---|---|
StringTools |
This class provides a collection of convenient methods for manipulating
Strings.
|
Class | Description |
---|---|
ValuePair |
A pair of two values with type parameters.
|
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
ValuePair |
A pair of two values with type parameters.
|
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeWithChangeSupport |
This interface extends the regular recursively defined
TreeNode by
adding methods to keep track of changes within the tree, such as
adding/removing, or exchanging of child nodes or the change of any other
attributes. |
Class | Description |
---|---|
TreeNodeChangeListener |
A listener interface that allows applications to get notified if the state of
any
TreeNode object changes. |