Package | Description |
---|---|
org.sbml.jsbml.ext.render.director |
This package contains interfaces and classes to create an implementation
to create a graphical representation of the
Layout
of a SBML document. |
Class | Description |
---|---|
AbstractSBGNnode | |
AbstractSBGNNodeWithCloneMarker | |
AssociationNode | |
Catalysis |
interface all the different graphical representations for catalysis arcs have
to implement
|
Compartment | |
Consumption |
interface all the different graphical representations for consumption arcs
have to implement
|
DissociationNode | |
Inhibition |
interface all the different graphical representations for inhibition arcs
have to implement
|
LayoutAlgorithm |
Interface for defining an algorithm to create bounding boxes, dimensions and
points missing in the layout.
|
LayoutBuilder |
LayoutBuilder provides methods to build graphical representations for
all glyph types.
|
LayoutFactory |
Interface that defines methods to create and return the different types of
nodes and arcs.
|
Macromolecule |
interface all the different graphical representations for macromolecule nodes
have to implement
|
Modulation |
Interface for the SBGN specified modulation arc.
|
NecessaryStimulation |
Interface for the SBGN specified necessary stimulation arc.
|
NucleicAcidFeature | |
OmittedProcessNode | |
PerturbingAgent | |
ProcessNode | |
Production |
interface all the different graphical representations for production arcs
have to implement
|
ReversibleConsumption |
Interface for all reversible consumption processes.
|
SBGNArc |
interface for the different types of connecting arcs
consumption
reversible consumption
production
catalysis
inhibition
|
SBGNNode |
interface for the different types of entity pool nodes
unspecified entity
simple chemical
macromolecule
source/sink
|
SBGNNodeWithCloneMarker | |
SBGNProcessNode |
Interface for all SBGN specified process nodes.
|
SimpleChemical |
Abstract class that all the different graphical representations for simple
chemical nodes have to extend.
|
SimpleLayoutAlgorithm.RelativePosition |
Enumeration types (enums) for relative positions.
|
SourceSink |
Abstract class that all the different graphical representations for the empty
set sign have to implement
|
Stimulation |
Interface for the SBGN specified stimulation arc.
|
UncertainProcessNode | |
UnspecifiedNode |
Abstract class that all the different graphical representations for
unspecified entity pool nodes have to implement
|