Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.dyn |
Provides classes for the
Dynamic Structures package.
|
org.sbml.jsbml.ontology |
Modifier and Type | Method | Description |
---|---|---|
static Term |
SBO.getSBORoot() |
Returns the root element of the SBO Ontology (SBO:0000000).
|
static Term |
SBO.getTerm(int sboTerm) |
Gets the SBO term with the id 'sboTerm'.
|
static Term |
SBO.getTerm(java.lang.String sboTerm) |
Gets the SBO term with the id 'sboTerm'.
|
Modifier and Type | Method | Description |
---|---|---|
static java.util.Set<Term> |
SBO.getTerms() |
Return the set of terms of the SBO Ontology.
|
Modifier and Type | Method | Description |
---|---|---|
static java.util.Set<Triple> |
SBO.getTriples(Term subject,
Term predicate,
Term object) |
Returns a set of Triple which match the supplied subject, predicate and object.
|
Modifier and Type | Method | Description |
---|---|---|
Term |
DynSBasePlugin.getCBOTerm() |
Returns the value of CBO
|
static Term |
CBO.getTerm(java.lang.String cboTerm) |
Gets the CBO term with the id 'cboTerm'.
|
Modifier and Type | Method | Description |
---|---|---|
static java.util.Set<Term> |
CBO.getTerms() |
Return the set of terms of the CBO.
|
Modifier and Type | Method | Description |
---|---|---|
static java.util.Set<Triple> |
CBO.getTriples(Term subject,
Term predicate,
Term object) |
Returns a set of Triple which match the supplied subject, predicate and
object.
|
void |
DynSBasePlugin.setCBOTerm(Term cboTerm) |
Sets the value of CBO
|
Modifier and Type | Method | Description |
---|---|---|
Term |
Term.clone() |
|
Term |
Triple.getObject() |
Returns the object of this
Triple . |
Term |
Triple.getPredicate() |
Returns the predicate of this
Triple . |
Term |
Triple.getSubject() |
Returns the subject of this
Triple . |
Modifier and Type | Method | Description |
---|---|---|
java.util.Set<Term> |
Term.getChildren() |
Returns a set of all the children Term.
|
java.util.Set<Term> |
Term.getParentTerms() |
Returns the parent Terms.
|
Modifier and Type | Method | Description |
---|---|---|
int |
Term.compareTo(Term term) |
|
static java.lang.String |
Term.printTerm(Term term) |
Returns a String representing a term the same way as in the OBO file.
|