Package | Description |
---|---|
org.sbml.jsbml.ext.layout |
Provides classes for the Layout
package.
|
org.sbml.jsbml.ext.render.director |
This package contains interfaces and classes to create an implementation
to create a graphical representation of the
Layout
of a SBML document. |
Modifier and Type | Method | Description |
---|---|---|
SpeciesGlyph |
SpeciesGlyph.clone() |
|
SpeciesGlyph |
GeneralGlyph.createSpeciesGlyph() |
Creates a new
SpeciesGlyph element and adds it to the ListOfSubGlyphs list. |
SpeciesGlyph |
GeneralGlyph.createSpeciesGlyph(java.lang.String id) |
Creates a new
SpeciesGlyph element and adds it to the ListOfSubGlyphs list. |
SpeciesGlyph |
Layout.createSpeciesGlyph(java.lang.String id) |
Creates and adds a new
SpeciesGlyph with the given identifier. |
SpeciesGlyph |
Layout.createSpeciesGlyph(java.lang.String id,
java.lang.String species) |
Creates and adds a new
SpeciesGlyph . |
SpeciesGlyph |
Layout.getSpeciesGlyph(int i) |
|
SpeciesGlyph |
Layout.getSpeciesGlyph(java.lang.String id) |
|
SpeciesGlyph |
SpeciesReferenceGlyph.getSpeciesGlyphInstance() |
|
SpeciesGlyph |
Layout.removeSpeciesGlyph(int i) |
Removes an element from the listOfSpeciesGlyphs at the given index.
|
SpeciesGlyph |
Layout.removeSpeciesGlyph(java.lang.String speciesGlyphId) |
Removes an element from the listOfSpeciesGlyphs.
|
Modifier and Type | Method | Description |
---|---|---|
java.util.List<SpeciesGlyph> |
Layout.findSpeciesGlyphs(java.lang.String speciesID) |
Searches all instances of
SpeciesGlyph within this Layout that
refer to the Species with the given id. |
ListOf<SpeciesGlyph> |
Layout.getListOfSpeciesGlyphs() |
Modifier and Type | Method | Description |
---|---|---|
void |
Layout.addSpeciesGlyph(SpeciesGlyph speciesGlyph) |
|
boolean |
Layout.removeSpeciesGlyph(SpeciesGlyph speciesGlyph) |
Removes an element from the listOfSpeciesGlyphs.
|
Modifier and Type | Method | Description |
---|---|---|
void |
Layout.setListOfSpeciesGlyphs(ListOf<SpeciesGlyph> speciesGlyphs) |
This element is optional.
|
Constructor | Description |
---|---|
SpeciesGlyph(SpeciesGlyph speciesGlyph) |
Modifier and Type | Method | Description |
---|---|---|
void |
LayoutBuilder.buildEntityPoolNode(SpeciesGlyph speciesGlyph,
boolean cloneMarker) |
method for the drawing of an entity pool node with the given size and
position of the
BoundingBox of the given SpeciesGlyph |
static java.awt.Color |
RenderProcessor.getRenderFillColor(SpeciesGlyph sg) |