See: Description
| Interface | Description |
|---|---|
| Association |
Represents either
a single gene, or a collection of genes in a logical expression and is only ever instantiated as one of its subclasses:
GeneProductRef, And and Or. |
| Class | Description |
|---|---|
| AbstractFBCSBasePlugin |
Represents the basic properties of all
SBasePlugin in the FBC package. |
| And |
This class represents a set of two or more associations that are related in an order independent ‘and’
relationship.
|
| CobraConstants | |
| FBCConstants |
Contains constants related to the FBC package.
|
| FBCModelPlugin |
FBCModelPlugin is the extended Model class for the FBC package. |
| FBCReactionPlugin |
Extends the SBML Level 3 Version 1 Core
Reaction class with the addition of a
new optional element GeneProductAssociation as well as two optional attributes lowerFluxBound and
upperFluxBound. |
| FBCSpeciesPlugin |
Extends the SBML core
Species class with the additional
attributes charge and chemicalFormula. |
| FluxBound | Deprecated
Only defined in FBC Version 1.
|
| FluxObjective |
The
FluxObjective class is a relatively simple container for a model
variable weighted by a signed linear coefficient. |
| GeneProduct |
Defines a single gene product.
|
| GeneProductAssociation |
Contains a single
Association. |
| GeneProductRef |
References a
GeneProduct. |
| ListOfObjectives |
ListOfObjectives adds an additional required attribute: 'activeObjective'. |
| LogicalOperator |
Represents a collection of genes in a logical expression.
|
| Objective |
An integral component in a complete description of a steady-state model is the so-called
'objective function' which generally consists of a linear combination of model variables
(fluxes) and a sense (direction).
|
| Or |
This class represents a set of two or more associations that are related in an order independent ‘and’
relationship.
|
| Enum | Description |
|---|---|
| FBCList |
Lists used in the FBC package.
|
| FluxBound.Operation | Deprecated
Only defined in FBC version 1.
|
| Objective.Type |
The current JSBML implementation of this package follow the FBC version 1 release 1 specifications.
