ReadingParser
and/or WritingParser to read or write some
specific parts of an SBML file.| Interface | Description |
|---|---|
| AnnotationReader |
The interface to implement for the SBML parsers reading SBML annotations.
|
| AnnotationWriter |
The interface to implement for the SBML parsers writing SBML annotations.
|
| PackageParser |
Interface that define some common methods that the parsers for SBML packages need
to implement in order to provide some basic information about them.
|
| ReadingParser |
The interface to implement for the SBML parsers reading SBML files.
|
| WritingParser |
The interface to implement for a parser which writes a SBML file.
|
| Class | Description |
|---|---|
| AbstractReaderWriter |
Contains some code shared by most of the L3 packages parsers.
|
| ArraysParser | |
| CompParser |
A CompParser is used to parse the comp extension package elements and
attributes.
|
| DistribParser |
This class is used to parse the distrib extension package elements and
attributes.
|
| DynParser |
This class is used to parse the dynamic structures extension package elements
and attributes.
|
| FBCParser |
This class is used to parse the fbc extension package elements and
attributes.
|
| GroupsParser |
This class is used to parse the groups extension package elements and
attributes.
|
| L3LayoutParser |
This class is used to parse the layout extension package elements and
attributes.
|
| LayoutParser |
Parses the SBML level 2 layout extension package elements and
attributes.
|
| MathMLParser | Deprecated.
this class should not be used anymore, replaced by
MathMLStaxParser. |
| MathMLStaxParser |
A MathMLStaxParser is used to parse the MathML expressions injected into a SBML
file.
|
| MultiParser |
A MultiParser is used to parse the multi extension package elements and
attributes.
|
| PackageUtil | |
| ParserManager | |
| QualParser |
This class is used to parse the qual extension package elements and
attributes.
|
| RenderParser | |
| ReqParser |
A ReqParser is used to parse the req extension package elements and
attributes.
|
| SBMLCoreParser |
Parses the SBML core elements of an SBML file.
|
| SBMLRDFAnnotationParser |
Parses the RDF annotations as defined in the SBML specifications and put them into objects.
|
| SpatialParser | |
| XMLNodeReader |
A
XMLNodeReader can be used to store any XML into an XMLNode. |
| XMLNodeWriter |