Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.layout |
Provides classes for the Layout
package.
|
org.sbml.jsbml.math | |
org.sbml.jsbml.util |
A collection of handy utilities when working with JSBML classes,
such as classes for String manipulation or mathematical operations.
|
org.sbml.jsbml.util.filters |
Filters are useful to decide whether or not to accept a certain item.
|
org.sbml.jsbml.validator.offline.constraints.helper |
Modifier and Type | Method | Description |
---|---|---|
java.util.List<? extends javax.swing.tree.TreeNode> |
AbstractTreeNode.filter(Filter filter) |
|
java.util.List<? extends javax.swing.tree.TreeNode> |
AbstractTreeNode.filter(Filter filter,
boolean retainInternalNodes) |
|
java.util.List<? extends javax.swing.tree.TreeNode> |
AbstractTreeNode.filter(Filter filter,
boolean retainInternalNodes,
boolean prune) |
|
java.util.List<T> |
ListOf.filterList(Filter f) |
Returns a new
List that contains only those elements that
satisfy a certain filter criterion. |
T |
ListOf.firstHit(Filter f) |
Returns the first element in this list that satisfies a certain filter
criterion.
|
java.util.List<ASTNode> |
ASTNode.getListOfNodes(Filter filter) |
Returns the list of children of the current ASTNode that satisfy the
given filter.
|
boolean |
ListOf.removeAll(Filter f) |
Removes all elements from this list that are accepted by the
accepts(Object)
method of the given filter. |
T |
ListOf.removeFirst(Filter f) |
Removes the first element from this list that is accepted by the
accepts(Object)
method of the given filter. |
Modifier and Type | Class | Description |
---|---|---|
class |
NamedSBaseReferenceFilter |
This is a special
NameFilter that allows users to search for a
AbstractReferenceGlyph that refers to a NamedSBase with the
given identifier attribute. |
Modifier and Type | Method | Description |
---|---|---|
java.util.List<? extends javax.swing.tree.TreeNode> |
ASTUnknown.filter(Filter filter) |
|
java.util.List<? extends javax.swing.tree.TreeNode> |
ASTUnknown.filter(Filter filter,
boolean retainInternalNodes) |
|
java.util.List<? extends javax.swing.tree.TreeNode> |
ASTUnknown.filter(Filter filter,
boolean retainInternalNodes,
boolean prune) |
|
java.util.List<ASTNode2> |
ASTFunction.getListOfNodes(Filter filter) |
Returns the list of children of the current ASTFunction that satisfy the
given filter.
|
Modifier and Type | Method | Description |
---|---|---|
java.util.List<? extends javax.swing.tree.TreeNode> |
TreeNodeWithChangeSupport.filter(Filter filter) |
Filters this tree data structure recursively and returns a list of all
TreeNode s that are accepted by the Filter . |
java.util.List<? extends javax.swing.tree.TreeNode> |
TreeNodeWithChangeSupport.filter(Filter filter,
boolean retainInternalNodes) |
Filters this tree data structure recursively and returns a list of all
TreeNode s that are accepted by the Filter . |
java.util.List<? extends javax.swing.tree.TreeNode> |
TreeNodeWithChangeSupport.filter(Filter filter,
boolean retainInternalNodes,
boolean prune) |
Filters this tree data structure recursively and returns a list of all
TreeNode s that are accepted by the Filter . |
Modifier and Type | Class | Description |
---|---|---|
class |
AndFilter |
A
Filter that accepts an item only if all of its internal filters
also accept the given item. |
class |
AssignmentVariableFilter |
This filter only accepts instances of
Assignment with the variable as
given in the constructor of this object. |
class |
BoundaryConditionFilter |
This filter accepts species whose boundary condition is set to true.
|
class |
CVTermFilter |
|
class |
IdenticalUnitDefinitionFilter |
This
Filter only accepts instances of UnitDefinition that
satisfy the method
UnitDefinition.areIdentical(UnitDefinition, UnitDefinition) . |
class |
IdFilter |
This filter only accepts instances of
SBase with the id as
given in the constructor of this object. |
class |
MetaIdFilter |
This filter only accepts instances of
SBase with the metaid as
given in the constructor of this object. |
class |
NameFilter |
This filter only accepts instances of
SBase with the id or name as
given in the constructor of this object. |
class |
OrFilter |
This filter accepts an item if at least one of its filters accepts the given
item.
|
class |
SBOFilter |
|
class |
SIdFilter |
|
class |
SpeciesReferenceFilter |
This is a special
NameFilter that allows users to search for a
SimpleSpeciesReference that refers to a Species with the
given identifier attribute. |
class |
XMLNodeFilter |
Modifier and Type | Method | Description |
---|---|---|
java.util.Set<Filter> |
AndFilter.getFilters() |
Modifier and Type | Method | Description |
---|---|---|
boolean |
AndFilter.addFilter(Filter filter) |
|
boolean |
AndFilter.removeFilter(Filter filter) |
Modifier and Type | Method | Description |
---|---|---|
void |
AndFilter.setFilters(java.util.Set<Filter> filters) |
Constructor | Description |
---|---|
AndFilter(Filter... filters) |
|
OrFilter(Filter... filters) |
Modifier and Type | Field | Description |
---|---|---|
static Filter |
ValidationTools.FILTER_IS_FUNCTION |
|
static Filter |
ValidationTools.FILTER_IS_NAME |