Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.util.compilers |
The classes in this package can be used to evaluate the information
represented by abstract syntax trees (ASTNode objects).
|
Modifier and Type | Method | Description |
---|---|---|
static java.lang.String |
ASTNode.formulaToString(ASTNode tree,
FormulaCompiler compiler) |
Returns the formula from the given
ASTNode as an
infix mathematical formula produce by the given FormulaCompiler . |
java.lang.String |
ASTNode.toFormula(FormulaCompiler compiler) |
Converts this
ASTNode to a text string using a specific FormulaCompiler . |
Modifier and Type | Class | Description |
---|---|---|
class |
ConfigurableLogicalFormulaCompiler |
This class creates formula
String s that represent the content of ASTNode s and try to reproduce an output similar to old COBRA SBML files. |
class |
FormulaCompilerLibSBML |
This class creates C-like infix formula
String s that represent the
content of ASTNode s and try to reproduce the output generated by the LibSBML L3 parser. |
class |
FormulaCompilerNoPiecewise |
Produces an infix formula like
FormulaCompiler but removes all the
piecewise functions. |
class |
LibSBMLFormulaCompiler |
This class creates C-like infix formula
String s that represent the
content of ASTNode s and try to reproduce the output generated by the LibSBML historical parser (compatible with SBML L1 infix). |