Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.distrib | |
org.sbml.jsbml.text.parser |
Provides classes to parse formula
Strings and to convert these into abstract syntax tree data structures.
|
org.sbml.jsbml.util |
A collection of handy utilities when working with JSBML classes,
such as classes for String manipulation or mathematical operations.
|
Modifier and Type | Method | Description |
---|---|---|
static ASTNode |
ASTNode.parseFormula(java.lang.String formula) |
Parses a text-string mathematical formula and returns a representation as
an Abstract Syntax Tree.
|
static ASTNode |
ASTNode.parseFormula(java.lang.String formula,
IFormulaParser parser) |
Parses a text-string mathematical formula, using the given
IFormulaParser and returns a representation as
an Abstract Syntax Tree. |
static ASTNode |
JSBML.parseFormula(java.lang.String formula) |
Parses a text-string mathematical formula and returns a representation as
an Abstract Syntax Tree.
|
void |
AbstractMathContainer.setFormula(java.lang.String formula) |
Deprecated.
|
void |
MathContainer.setFormula(java.lang.String formula) |
Deprecated.
As this is part of SBML Level 1, it is strongly recommended
not to work with the
String representation of a
formula, but to deal with a more flexible ASTNode .
Please use ASTNode.parseFormula(String) to create an
ASTNode object from your formula String . |
Modifier and Type | Method | Description |
---|---|---|
void |
UncertParameter.setFormula(java.lang.String formula) |
Deprecated.
|
Modifier and Type | Method | Description |
---|---|---|
ParseException |
CobraFormulaParser.generateParseException() |
Generate ParseException.
|
ParseException |
FormulaParser.generateParseException() |
Generate ParseException.
|
ParseException |
FormulaParserASTNode2.generateParseException() |
Generate ParseException.
|
ParseException |
FormulaParserLL3.generateParseException() |
Generate ParseException.
|
ParseException |
FormulaParserLL3ASTNode2.generateParseException() |
Generate ParseException.
|
Modifier and Type | Method | Description |
---|---|---|
ASTNode |
CobraFormulaParser.parse() |
|
ASTNode |
FormulaParser.parse() |
|
ASTNode |
FormulaParserASTNode2.parse() |
|
ASTNode |
FormulaParserLL3.parse() |
|
ASTNode |
FormulaParserLL3ASTNode2.parse() |
|
ASTNode |
IFormulaParser.parse() |
|
Token |
CobraFormulaParser.string() |
|
Token |
FormulaParser.string() |
|
Token |
FormulaParserASTNode2.string() |
|
Token |
FormulaParserLL3.string() |
|
Token |
FormulaParserLL3ASTNode2.string() |
Modifier and Type | Method | Description |
---|---|---|
static KineticLaw |
ModelBuilder.buildKineticLaw(Reaction reaction,
java.lang.String formula,
Pair<java.lang.String,java.lang.Double>... localParameters) |