Package | Description |
---|---|
org.sbml.jsbml.ext.qual |
Provides classes for the Qualitative Models package.
|
Modifier and Type | Method | Description |
---|---|---|
QualitativeSpecies |
QualitativeSpecies.clone() |
|
QualitativeSpecies |
QualModelPlugin.createQualitativeSpecies() |
Creates a new
QualitativeSpecies inside this QualModelPlugin and returns it. |
QualitativeSpecies |
QualModelPlugin.createQualitativeSpecies(java.lang.String id) |
Creates a new
QualitativeSpecies inside this QualModelPlugin and returns it. |
QualitativeSpecies |
QualModelPlugin.createQualitativeSpecies(java.lang.String id,
java.lang.String compartment,
boolean constant) |
Creates a new
QualitativeSpecies inside this QualModelPlugin and returns it. |
QualitativeSpecies |
QualModelPlugin.createQualitativeSpecies(java.lang.String id,
java.lang.String metaId,
Species species) |
Creates a new
QualitativeSpecies , based on an existing Species ,
adds it to this QualModelPlugin and returns it. |
QualitativeSpecies |
QualModelPlugin.createQualitativeSpecies(java.lang.String id,
Compartment c) |
|
QualitativeSpecies |
QualModelPlugin.createQualitativeSpecies(java.lang.String id,
Compartment compartment,
boolean constant) |
Creates a new
QualitativeSpecies inside this QualModelPlugin and returns it. |
QualitativeSpecies |
QualModelPlugin.getQualitativeSpecies(int i) |
Gets the ith
QualitativeSpecies . |
QualitativeSpecies |
QualModelPlugin.getQualitativeSpecies(java.lang.String id) |
Gets the
QualitativeSpecies that has the given id. |
QualitativeSpecies |
Input.getQualitativeSpeciesInstance() |
|
QualitativeSpecies |
Output.getQualitativeSpeciesInstance() |
Modifier and Type | Method | Description |
---|---|---|
ListOf<QualitativeSpecies> |
QualModelPlugin.getListOfQualitativeSpecies() |
Modifier and Type | Method | Description |
---|---|---|
void |
QualModelPlugin.addQualitativeSpecies(QualitativeSpecies qualitativeSpecies) |
Adds a
QualitativeSpecies to the model. |
boolean |
QualModelPlugin.addSpecies(QualitativeSpecies spec) |
Adds a
QualitativeSpecies instance to the listOfSpecies of this Model. |
boolean |
QualModelPlugin.containsQualitativeSpecies(QualitativeSpecies qs) |
|
Input |
Transition.createInput(java.lang.String id,
QualitativeSpecies qualitativeSpecies,
InputTransitionEffect transitionEffect) |
|
Output |
Transition.createOutput(java.lang.String id,
QualitativeSpecies qualitativeSpecies,
OutputTransitionEffect transitionEffect) |
|
boolean |
QualModelPlugin.removeQualitativeSpecies(QualitativeSpecies qualitativeSpecies) |
Modifier and Type | Method | Description |
---|---|---|
void |
QualModelPlugin.setListOfQualitativeSpecies(ListOf<QualitativeSpecies> listOfQualitativeSpecies) |
QualModelPlugin may contain at most one listOfQualitativeSpecies
which must contain at least on QualitativeSpecies . |
Constructor | Description |
---|---|
Input(java.lang.String id,
QualitativeSpecies qualitativeSpecies,
InputTransitionEffect transitionEffect) |
Creates a new
Input instance. |
Output(java.lang.String id,
QualitativeSpecies qualitativeSpecies,
OutputTransitionEffect transitionEffect) |
Creates a new
Output instance. |
Output(QualitativeSpecies qualitativeSpecies,
OutputTransitionEffect transitionEffect) |
Creates a new
Output instance. |
QualitativeSpecies(QualitativeSpecies qualSpecies) |
Creates a new
QualitativeSpecies instance. |