The current version implemented follow the proposal by Nicolas Le Novère and Anika Oellrich. There is only few classes from the proposal and it need to be completed.
| Class | Description |
|---|---|
| BindingSiteSpeciesType |
A
BindingSiteSpeciesType object is a binding site, and therefore its instance can further define the bindingStatus
attribute and can participate a binding internally and explicitly in an InSpeciesTypeBond object, or externally and
implicitly defined by an OutwardBindingSite object. |
| CompartmentReference | |
| InSpeciesTypeBond |
Defines a bond existing within a
MultiSpeciesType. |
| IntraSpeciesReaction | |
| MultiASTNodePlugin | |
| MultiCompartmentPlugin | |
| MultiConstants |
Contains some constants related to the multi package.
|
| MultiModelPlugin |
In order to encode the structures needed to define and use multistate and multi-component
complexes, the element model is extended to be linked to a list of
MultiSpeciesTypes. |
| MultiSimpleSpeciesReferencePlugin | |
| MultiSpeciesPlugin |
A species in the Multi package is extended from a pool to a
template or pattern which multiple pools may map to.
|
| MultiSpeciesReferencePlugin | |
| MultiSpeciesType |
The element MultiSpeciesType, which is part of SBML Level 2 Version 4 specification, is not part
of SBML Level 3 Version 1 Core any more.
|
| OutwardBindingSite |
A binding site not involved in any
InSpeciesTypeBond object in the MultiSpeciesType referenced by a Species is
an outwardBindingSite. |
| PossibleSpeciesFeatureValue |
Each state feature (
SpeciesFeatureType) also requires the definition of all
the possible values it can take. |
| SpeciesFeature |
Defines the state of a component in a species by selecting values from
the listOfPossibleSpeciesFeatureValues of the referenced
SpeciesFeatureType. |
| SpeciesFeatureType |
A species type (
MultiSpeciesType) can carry any number of features
(SpeciesFeatureType), which are characteristic properties specific
for this type of species (Species). |
| SpeciesFeatureValue | |
| SpeciesTypeComponentIndex |
Provides a way to identify or index a component within a
MultiSpeciesType. |
| SpeciesTypeComponentMapInProduct |
A speciesTypeComponentMapInProduct defines the mapping between a component in a reactant and a component
in a product.
|
| SpeciesTypeInstance |
Provides a way to construct
MultiSpeciesTypes and Species with multiple components. |
| SubListOfSpeciesFeature |
Allows to regroup a set of
SpeciesFeature that have a specific Relation between them. |
| Enum | Description |
|---|---|
| BindingStatus |
The BindingStatus enumeration is used in the definition of the
OutwardBindingSite class. |
| Relation |
The Relation enumeration is used in the definition of the ListOfSpeciesFeatures
class.
|
| RepresentationType |
The RepresentationType enumeration is used in the extension of the ci element.
|
