java.io.Serializable
, java.lang.Cloneable
, javax.swing.tree.TreeNode
, CallableSBase
, CompartmentalizedSBase
, NamedSBase
, NamedSBaseWithDerivedUnit
, SBase
, SBaseWithDerivedUnit
, UniqueNamedSBase
, UniqueSId
, TreeNodeWithChangeSupport
public class IntraSpeciesReaction extends Reaction
JSBML_WRONG_SBO_TERM
Constructor | Description |
---|---|
IntraSpeciesReaction() |
Creates an IntraSpeciesReaction instance
|
IntraSpeciesReaction(int level,
int version) |
Creates a IntraSpeciesReaction instance with a level and version.
|
IntraSpeciesReaction(java.lang.String id) |
Creates a IntraSpeciesReaction instance with an id.
|
IntraSpeciesReaction(java.lang.String id,
int level,
int version) |
Creates a IntraSpeciesReaction instance with an id, level, and version.
|
IntraSpeciesReaction(java.lang.String id,
java.lang.String name,
int level,
int version) |
Creates a IntraSpeciesReaction instance with an id, name, level, and version.
|
IntraSpeciesReaction(IntraSpeciesReaction obj) |
Clone constructor
|
Modifier and Type | Method | Description |
---|---|---|
IntraSpeciesReaction |
clone() |
clones this class
|
void |
initDefaults() |
Initializes the default values using the namespace.
|
isValidId
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, addResources, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllDeclaredNamespaces, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getFirstElementIndex, getHistory, getId, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addModifier, addProduct, addReactant, containsUndeclaredUnits, createKineticLaw, createModifier, createModifier, createModifier, createModifier, createModifier, createProduct, createProduct, createProduct, createProduct, createProduct, createReactant, createReactant, createReactant, createReactant, createReactant, equals, getAllowsChildren, getChildAt, getChildCount, getCompartment, getCompartmentInstance, getDerivedUnitDefinition, getDerivedUnits, getFast, getKineticLaw, getListOfModifiers, getListOfProducts, getListOfReactants, getModifier, getModifier, getModifierCount, getModifierForSpecies, getNumModifiers, getNumProducts, getNumReactants, getParent, getProduct, getProduct, getProductCount, getProductForSpecies, getReactant, getReactant, getReactantCount, getReactantForSpecies, getReversible, hashCode, hasModifier, hasProduct, hasReactant, initDefaults, initDefaults, involves, isCompartmentMandatory, isFast, isIdMandatory, isListOfModifiersEmpty, isListOfProductsEmpty, isListOfReactantsEmpty, isReversible, isSetCompartment, isSetCompartmentInstance, isSetFast, isSetKineticLaw, isSetListOfModifiers, isSetListOfProducts, isSetListOfReactants, isSetReversible, readAttribute, removeModifier, removeModifier, removeModifier, removeProduct, removeProduct, removeProduct, removeReactant, removeReactant, removeReactant, setCompartment, setCompartment, setFast, setKineticLaw, setListOfModifiers, setListOfProducts, setListOfReactants, setReversible, unsetCompartment, unsetFast, unsetKineticLaw, unsetListOfModifiers, unsetListOfProducts, unsetListOfReactants, unsetReversible, writeXMLAttributes
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTreeNodeChangeListener, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
public IntraSpeciesReaction()
public IntraSpeciesReaction(java.lang.String id)
id
- the identifier for the new element.public IntraSpeciesReaction(int level, int version)
level
- SBML Levelversion
- SBML Versionpublic IntraSpeciesReaction(java.lang.String id, int level, int version)
id
- the identifier for this element.level
- the SBML Levelversion
- the SBML Versionpublic IntraSpeciesReaction(java.lang.String id, java.lang.String name, int level, int version)
id
- the identifier for this element.name
- a human-readable name for this element that can be used for display purposes.level
- the SBML Levelversion
- the SBML Versionpublic IntraSpeciesReaction(IntraSpeciesReaction obj)
public IntraSpeciesReaction clone()
public void initDefaults()
initDefaults
in class Reaction