Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.multi |
Provides classes for the Multi package.
|
Modifier and Type | Method | Description |
---|---|---|
SpeciesType |
SpeciesType.clone() |
Deprecated.
|
SpeciesType |
Model.createSpeciesType() |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
SpeciesType |
Model.createSpeciesType(java.lang.String id) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
SpeciesType |
Model.getSpeciesType(int n) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
SpeciesType |
Model.getSpeciesType(java.lang.String id) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
SpeciesType |
Species.getSpeciesTypeInstance() |
Deprecated.
Only valid for SBML Level 2 Versions 2, 3, and 4.
|
SpeciesType |
Model.removeSpeciesType(int n) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
SpeciesType |
Model.removeSpeciesType(java.lang.String id) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
Modifier and Type | Method | Description |
---|---|---|
ListOf<SpeciesType> |
Model.getListOfSpeciesTypes() |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
ListOf<SpeciesType> |
SpeciesType.getParent() |
Deprecated.
|
Modifier and Type | Method | Description |
---|---|---|
boolean |
Model.addSpeciesType(SpeciesType speciesType) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
void |
Species.setSpeciesType(SpeciesType speciesType) |
Deprecated.
This property is only valid for SBML Level 2 from Version 2.
|
Modifier and Type | Method | Description |
---|---|---|
void |
Model.setListOfSpeciesTypes(ListOf<SpeciesType> listOfSpeciesTypes) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
Constructor | Description |
---|---|
SpeciesType(SpeciesType nsb) |
Deprecated.
|
Modifier and Type | Class | Description |
---|---|---|
class |
BindingSiteSpeciesType |
A
BindingSiteSpeciesType object is a binding site, and therefore its instance can further define the bindingStatus
attribute and can participate a binding internally and explicitly in an InSpeciesTypeBond object, or externally and
implicitly defined by an OutwardBindingSite object. |
class |
MultiSpeciesType |
The element MultiSpeciesType, which is part of SBML Level 2 Version 4 specification, is not part
of SBML Level 3 Version 1 Core any more.
|