Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.spatial |
Provides classes for the
Spatial Geometries and Processes package.
|
Modifier and Type | Class | Description |
---|---|---|
class |
AbstractNamedSBaseWithUnit |
This simple implementation of the interfaces
NamedSBaseWithDerivedUnit and SBaseWithUnit defines elements
that can be addressed by their identifier and are or can be associated with a
defined Unit or UnitDefinition . |
class |
AssignmentRule |
Represents the assignmentRule XML element of a SBML file.
|
class |
Compartment |
Represents the compartment in a model, i.e., a variable element with name,
identifier, unit, and value that may change during a simulation.
|
class |
Event |
Represents the event XML element of a SBML file.
|
class |
ExplicitRule |
An explicit
Rule is a rule that explicitly declares its variable
element. |
class |
KineticLaw |
Represents the kineticLaw XML element of a SBML file.
|
class |
LocalParameter |
A local parameter can only be used to specify a constant within a
KineticLaw . |
class |
Parameter |
Represents a globally valid parameter in the model, i.e., a variable that
may change during a simulation or that provides a constant value.
|
class |
QuantityWithUnit |
This object represents an element with identifier and name, a value, and a
defined unit.
|
class |
RateRule |
Represents the rateRule XML element of a SBML file.
|
class |
Species |
Represents the species XML element of a SBML file.
|
class |
Symbol |
Modifier and Type | Class | Description |
---|---|---|
class |
CoordinateComponent |