Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.arrays.validator | |
org.sbml.jsbml.ext.arrays.validator.constraints | |
org.sbml.jsbml.validator.offline |
Provides classes to validate any kind of object offline.
|
org.sbml.jsbml.validator.offline.constraints |
Any validation constraints related to the multi package.
|
org.sbml.jsbml.validator.offline.factory |
Modifier and Type | Class | Description |
---|---|---|
class |
LevelVersionError |
|
class |
PropertyException |
This is an error of an undefined property or value for a property in some
instance of
SBase . |
class |
PropertyNotAvailableException |
An error that indicates that a property of an
SBase is
not available for the current SBML Level/Version combination. |
class |
PropertyUndefinedError |
This
PropertyException indicates that the value belonging to a
mandatory property, for which there is no default value, has not been
declared by the user. |
class |
SBMLTypeUndefinedException |
This error can be thrown whenever a data type is being initialized that is
undefined for a certain SBML Level/Version combination.
|
Modifier and Type | Method | Description |
---|---|---|
SBMLError |
SBMLDocument.getError(int i) |
Returns the ith error or warning encountered during consistency
checking.
|
SBMLError |
SBMLErrorLog.getError(long n) |
Returns the nth
SBMLError object in this log. |
Modifier and Type | Method | Description |
---|---|---|
java.util.List<SBMLError> |
SBMLErrorLog.getErrorsBySeverity(SBMLError.SEVERITY severity) |
|
java.util.List<SBMLError> |
SBMLErrorLog.getValidationErrors() |
Returns the list of
SBMLError |
Modifier and Type | Method | Description |
---|---|---|
boolean |
SBMLErrorLog.add(SBMLError e) |
Adds an error.
|
Modifier and Type | Method | Description |
---|---|---|
static java.util.List<SBMLError> |
ArraysMathValidator.validate(Model model,
MathContainer math) |
Validates the given
SBase object. |
static java.util.List<SBMLError> |
ArraysValidator.validate(SBMLDocument document) |
Validates the given
SBMLDocument |
static java.util.List<SBMLError> |
ArraysValidator.validate(SBMLDocument document,
boolean filter) |
Validates the given
SBMLDocument |
static java.util.List<SBMLError> |
DimensionValidator.validate(Model model,
Dimension dim) |
Validates the given
SBase object. |
static java.util.List<SBMLError> |
ExtendedSBaseValidator.validate(Model model,
SBase sbase) |
Validates the given
SBase object. |
static java.util.List<SBMLError> |
IndexValidator.validate(Model model,
Index index) |
Validates the given
SBase object. |
Modifier and Type | Method | Description |
---|---|---|
java.util.List<SBMLError> |
ArraysConstraint.getListOfErrors() |
Gets the listOfErrors after checking the model.
|
Modifier and Type | Method | Description |
---|---|---|
void |
LoggingValidationContext.logFailure(SBMLError error) |
Logs an
SBMLError into the SBMLErrorLog . |
Modifier and Type | Method | Description |
---|---|---|
static java.util.Set<java.lang.String> |
LoggingValidationContext.analyseSBMLerrorLog(java.util.List<SBMLError> validationErrors) |
Goes through the list of
SBMLError given to determined which
check categories should be ignored. |
Modifier and Type | Method | Description |
---|---|---|
static boolean |
ArraysUtils.checkListOfErrors(java.util.List<SBMLError> listOfErrors,
int errorCode) |
Checks the list of SBMLError to see if it contains the given error code, returns
true if it is found, else otherwise. |
Modifier and Type | Method | Description |
---|---|---|
static SBMLError |
SBMLErrorFactory.createError(int id,
int level,
int version) |
Creates a new
SBMLError instance. |
static SBMLError |
SBMLErrorFactory.createError(int id,
int level,
int version,
boolean customMessage,
SBase sbase) |
Creates a new
SBMLError instance. |