Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
Modifier and Type | Method | Description |
---|---|---|
ModifierSpeciesReference |
ModifierSpeciesReference.clone() |
|
ModifierSpeciesReference |
Model.createModifier() |
Creates a new
ModifierSpeciesReference object for a modifier
species inside the last Reaction object in this Model , and
returns a pointer to it. |
ModifierSpeciesReference |
Model.createModifier(java.lang.String id) |
Creates a new
ModifierSpeciesReference with the specified 'id'. |
ModifierSpeciesReference |
Reaction.createModifier() |
Creates a new
ModifierSpeciesReference , adds it to this
Reaction 's list of modifiers and returns it. |
ModifierSpeciesReference |
Reaction.createModifier(java.lang.String id) |
|
ModifierSpeciesReference |
Reaction.createModifier(java.lang.String id,
java.lang.String species) |
Creates a new
ModifierSpeciesReference with the given
id as its identifier, which points to the Species
with the given id , adds it to this Reaction 's
Reaction.listOfModifiers , and returns a pointer to it. |
ModifierSpeciesReference |
Reaction.createModifier(java.lang.String id,
Species species) |
Creates a new
ModifierSpeciesReference with the given
id as its identifier, which points to the given
Species , adds it to this Reaction 's
Reaction.listOfModifiers , and returns a pointer to it. |
ModifierSpeciesReference |
Reaction.createModifier(Species species) |
Creates a new
ModifierSpeciesReference , which points to the given
Species , adds it to this Reaction 's
Reaction.listOfModifiers , and returns a pointer to it. |
ModifierSpeciesReference |
Model.findModifierSpeciesReference(java.lang.String id) |
|
ModifierSpeciesReference |
Reaction.getModifier(int i) |
|
ModifierSpeciesReference |
Reaction.getModifier(java.lang.String id) |
Searches the first
ModifierSpeciesReference in the
Reaction.listOfModifiers of this Reaction with the given
identifier. |
ModifierSpeciesReference |
Reaction.getModifierForSpecies(java.lang.String id) |
Returns the first
ModifierSpeciesReference in the
Reaction.listOfModifiers of this Reaction whose 'species'
attribute points to a Species with the given identifier. |
ModifierSpeciesReference |
Reaction.removeModifier(int i) |
Removes the nth modifier species (ModifierSpeciesReference object) in the
list of modifiers in this Reaction and returns it.
|
ModifierSpeciesReference |
Reaction.removeModifier(java.lang.String id) |
Removes the modifier species (ModifierSpeciesReference object) having the
given 'species' attribute in the list of modifiers in this Reaction and
returns it.
|
Modifier and Type | Method | Description |
---|---|---|
ListOf<ModifierSpeciesReference> |
Reaction.getListOfModifiers() |
|
java.util.Set<ModifierSpeciesReference> |
Model.getModifierSpeciesReferences() |
Returns all
ModifierSpeciesReference s, registered in
any Reaction . |
Modifier and Type | Method | Description |
---|---|---|
boolean |
Reaction.addModifier(ModifierSpeciesReference modspecref) |
Adds a
ModifierSpeciesReference instance to this Reaction . |
boolean |
Reaction.removeModifier(ModifierSpeciesReference modspecref) |
Removes the ModifierSpeciesReference 'modspecref' from this Reaction.
|
Modifier and Type | Method | Description |
---|---|---|
void |
Reaction.setListOfModifiers(ListOf<ModifierSpeciesReference> listOfModifiers) |
Sets the listOfModifiers of this
Reaction . |
Constructor | Description |
---|---|
ModifierSpeciesReference(ModifierSpeciesReference modifierSpeciesReference) |
Creates a
ModifierSpeciesReference instance from a given
ModifierSpeciesReference . |