Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.arrays | |
org.sbml.jsbml.ext.comp |
Provides classes for the
Hierarchical Model Composition package.
|
org.sbml.jsbml.ext.distrib | |
org.sbml.jsbml.ext.dyn |
Provides classes for the
Dynamic Structures package.
|
org.sbml.jsbml.ext.fbc |
Provides classes for the
Flux Balance Constraints package (FBC).
|
org.sbml.jsbml.ext.groups |
Provides classes for the Groups
package.
|
org.sbml.jsbml.ext.layout |
Provides classes for the Layout
package.
|
org.sbml.jsbml.ext.multi |
Provides classes for the Multi package.
|
org.sbml.jsbml.ext.qual |
Provides classes for the Qualitative Models package.
|
org.sbml.jsbml.ext.render |
Provides classes for the render package, see the specification at sbml.org.
|
org.sbml.jsbml.ext.req | |
org.sbml.jsbml.ext.spatial |
Provides classes for the
Spatial Geometries and Processes package.
|
org.sbml.jsbml.util |
A collection of handy utilities when working with JSBML classes,
such as classes for String manipulation or mathematical operations.
|
Modifier and Type | Method | Description |
---|---|---|
ListOf<T> |
ListOf.clone() |
|
ListOf<Compartment> |
Model.getListOfCompartments() |
Returns the listOfCompartments of this
Model . |
ListOf<CompartmentType> |
Model.getListOfCompartmentTypes() |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
ListOf<Constraint> |
Model.getListOfConstraints() |
Returns the listOfConstraints of this
Model . |
ListOf<EventAssignment> |
Event.getListOfEventAssignments() |
Returns the listOfEventAssignments.
|
ListOf<Event> |
Model.getListOfEvents() |
Returns the listOfEvents of this
Model . |
ListOf<FunctionDefinition> |
Model.getListOfFunctionDefinitions() |
Returns the listOfFunctionDefinitions of this
Model . |
ListOf<InitialAssignment> |
Model.getListOfInitialAssignments() |
Returns the listOfInitialAssignments of this
Model . |
ListOf<LocalParameter> |
KineticLaw.getListOfLocalParameters() |
|
ListOf<ModifierSpeciesReference> |
Reaction.getListOfModifiers() |
|
ListOf<LocalParameter> |
KineticLaw.getListOfParameters() |
Deprecated.
|
ListOf<Parameter> |
Model.getListOfParameters() |
Returns the
Model.listOfParameters of this Model . |
ListOf<SpeciesReference> |
Reaction.getListOfProducts() |
|
ListOf<SpeciesReference> |
Reaction.getListOfReactants() |
|
ListOf<Reaction> |
Model.getListOfReactions() |
Returns the listOfReactions of this
Model . |
ListOf<Rule> |
Model.getListOfRules() |
Returns the listOfRules of this
Model . |
ListOf<Species> |
Model.getListOfSpecies() |
Returns the
Model.listOfSpecies of this Model . |
ListOf<SpeciesType> |
Model.getListOfSpeciesTypes() |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
ListOf<UnitDefinition> |
Model.getListOfUnitDefinitions() |
Returns the listOfUnitDefinitions of this
Model . |
ListOf<Unit> |
UnitDefinition.getListOfUnits() |
|
ListOf<CompartmentType> |
CompartmentType.getParent() |
Deprecated.
|
ListOf<Constraint> |
Constraint.getParent() |
|
ListOf<Event> |
Event.getParent() |
|
ListOf<EventAssignment> |
EventAssignment.getParent() |
|
ListOf<FunctionDefinition> |
FunctionDefinition.getParent() |
|
ListOf<InitialAssignment> |
InitialAssignment.getParent() |
|
ListOf<LocalParameter> |
LocalParameter.getParent() |
|
ListOf<Reaction> |
Reaction.getParent() |
|
ListOf<Rule> |
Rule.getParent() |
|
ListOf<SpeciesType> |
SpeciesType.getParent() |
Deprecated.
|
ListOf<Unit> |
Unit.getParent() |
|
ListOf<UnitDefinition> |
UnitDefinition.getParent() |
|
ListOf<LocalParameter> |
LocalParameter.getParentSBMLObject() |
|
static <T extends SBase> |
ListOf.initListOf(SBase parent,
ListOf<T> list,
ListOf.Type type) |
Initializes newly created lists.
|
static <T extends SBase> |
ListOf.newInstance(SBase parent,
java.lang.Class<T> clazz) |
Initializes a new
ListOf object for the given
parent SBML object and with the given Class as the type of the
list. |
Modifier and Type | Method | Description |
---|---|---|
static <T extends SBase> |
ListOf.initListOf(SBase parent,
ListOf<T> list,
ListOf.Type type) |
Initializes newly created lists.
|
void |
Model.setListOfCompartments(ListOf<Compartment> listOfCompartments) |
Sets the listOfCompartments of this
Model to 'listOfCompartments'. |
void |
Model.setListOfCompartmentTypes(ListOf<CompartmentType> listOfCompartmentTypes) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
void |
Model.setListOfConstraints(ListOf<Constraint> listOfConstraints) |
Sets the listOfConstraints of this
Model to 'listOfConstraints'. |
void |
Event.setListOfEventAssignments(ListOf<EventAssignment> listOfEventAssignments) |
Sets the given
ListOf<EventAssignment> . |
void |
Model.setListOfEvents(ListOf<Event> listOfEvents) |
Sets the listOfEvents of this
Model to 'listOfEvents'. |
void |
Model.setListOfFunctionDefinitions(ListOf<FunctionDefinition> listOfFunctionDefinitions) |
Sets the listOfFunctionDefinitions of this
Model to
'listOfFunctionDefinitions'. |
void |
Model.setListOfInitialAssignments(ListOf<InitialAssignment> listOfInitialAssignments) |
Sets the
Model.listOfInitialAssignments of this Model to
'listOfInitialAssignments'. |
void |
KineticLaw.setListOfLocalParameters(ListOf<LocalParameter> listOfLocalParameters) |
Sets the listOfParameters of this
KineticLaw to 'list'. |
void |
Reaction.setListOfModifiers(ListOf<ModifierSpeciesReference> listOfModifiers) |
Sets the listOfModifiers of this
Reaction . |
void |
Model.setListOfParameters(ListOf<Parameter> listOfParameters) |
Sets the
Model.listOfParameters of this Model to
'listOfParameters'. |
void |
Reaction.setListOfProducts(ListOf<SpeciesReference> listOfProducts) |
Sets the
Reaction.listOfProducts of this Reaction . |
void |
Reaction.setListOfReactants(ListOf<SpeciesReference> listOfReactants) |
Sets the listOfReactants of this
Reaction . |
void |
Model.setListOfReactions(ListOf<Reaction> listOfReactions) |
Sets the
Model.listOfReactions of this Model to
'listOfReactions'. |
void |
Model.setListOfRules(ListOf<Rule> listOfRules) |
Sets the
Model.listOfRules of this Model to 'listOfRules'. |
void |
Model.setListOfSpecies(ListOf<Species> listOfSpecies) |
Sets the listOfSpecies of this
Model to 'listOfSpecies'. |
void |
Model.setListOfSpeciesTypes(ListOf<SpeciesType> listOfSpeciesTypes) |
Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
|
void |
Model.setListOfUnitDefinitions(ListOf<UnitDefinition> listOfUnitDefinitions) |
Sets the listOfUnitDefinitions of this
Model to
'listOfUnitDefinitions'. |
void |
UnitDefinition.setListOfUnits(ListOf<Unit> listOfUnits) |
Sets the
UnitDefinition.listOfUnits of this UnitDefinition . |
Constructor | Description |
---|---|
ListOf(ListOf<? extends SBase> listOf) |
Creates a ListOf instance from a given ListOf.
|
Modifier and Type | Method | Description |
---|---|---|
ListOf<Dimension> |
ArraysSBasePlugin.getListOfDimensions() |
Returns the listOfDimensions.
|
ListOf<Index> |
ArraysSBasePlugin.getListOfIndices() |
Returns the listOfIndices.
|
Modifier and Type | Method | Description |
---|---|---|
void |
ArraysSBasePlugin.setListOfDimensions(ListOf<Dimension> listOfDimensions) |
Sets the given
ListOf<Dimension> . |
void |
ArraysSBasePlugin.setListOfIndices(ListOf<Index> listOfIndices) |
Sets the given
ListOf<Index> . |
Modifier and Type | Method | Description |
---|---|---|
ListOf<Deletion> |
Submodel.getListOfDeletions() |
Returns the listOfDeletions.
|
ListOf<ExternalModelDefinition> |
CompSBMLDocumentPlugin.getListOfExternalModelDefinitions() |
Returns the listOfExternalModelDefinitions.
|
ListOf<ModelDefinition> |
CompSBMLDocumentPlugin.getListOfModelDefinitions() |
Returns the listOfModelDefinitions.
|
ListOf<Port> |
CompModelPlugin.getListOfPorts() |
Returns the listOfPorts.
|
ListOf<ReplacedElement> |
CompSBasePlugin.getListOfReplacedElements() |
Returns the listOfReplacedElements
|
ListOf<Submodel> |
CompModelPlugin.getListOfSubmodels() |
Returns the listOfSubmodels.
|
Modifier and Type | Method | Description |
---|---|---|
void |
Submodel.setListOfDeletions(ListOf<Deletion> listOfDeletions) |
Sets the given
ListOf<Deletion> . |
void |
CompSBMLDocumentPlugin.setListOfExternalModelDefinitions(ListOf<ExternalModelDefinition> listOfExternalModelDefinitions) |
The listOfExternamModelDefinitions is an optional element of
CompSBMLDocumentPlugin
and defines external SBML document references within the ExternalModelDefinition
object. |
void |
CompSBMLDocumentPlugin.setListOfModelDefinitions(ListOf<ModelDefinition> listOfModelDefinitions) |
listOfModelDefinitions is an optional list of
CompSBMLDocumentPlugin
which specifies ModelDefinition s for the SBML document. |
void |
CompModelPlugin.setListOfPorts(ListOf<Port> listOfPorts) |
Sets the optional
ListOf<Port> . |
void |
CompSBasePlugin.setListOfReplacedElements(ListOf<ReplacedElement> listOfReplacedElements) |
Sets the listOfReplacedElements.
|
void |
CompModelPlugin.setListOfSubmodels(ListOf<Submodel> listOfSubmodels) |
Sets the optional
ListOf<Submodel> . |
Modifier and Type | Method | Description |
---|---|---|
ListOf<Uncertainty> |
DistribSBasePlugin.getListOfUncertainties() |
Returns the
DistribSBasePlugin.listOfUncertainties . |
ListOf<UncertParameter> |
Uncertainty.getListOfUncertParameters() |
Returns the
Uncertainty.listOfUncertParameters . |
ListOf<UncertParameter> |
UncertParameter.getListOfUncertParameters() |
Returns the
UncertParameter.listOfUncertParameters . |
Modifier and Type | Method | Description |
---|---|---|
void |
DistribSBasePlugin.setListOfUncertainties(ListOf<Uncertainty> listOfUncertainties) |
Sets the given
ListOf<Uncertainty> . |
void |
Uncertainty.setListOfUncertParameters(ListOf<UncertParameter> listOfUncertParameters) |
Sets the given
ListOf<UncertParameter> . |
void |
UncertParameter.setListOfUncertParameters(ListOf<UncertParameter> listOfUncertParameters) |
Sets the given
ListOf<UncertParameter> . |
Modifier and Type | Method | Description |
---|---|---|
ListOf<DynElement> |
DynEventPlugin.getListOfDynElements() |
Returns the value of listOfDynElements
|
ListOf<SpatialComponent> |
DynCompartmentPlugin.getListOfSpatialComponents() |
Returns the value of listOfSpatialComponents
|
Modifier and Type | Method | Description |
---|---|---|
void |
DynEventPlugin.setListOfDynElements(ListOf<DynElement> listOfDynElements) |
Sets the value of listOfDynElements
|
void |
DynCompartmentPlugin.setListOfSpatialComponents(ListOf<SpatialComponent> listOfSpatialComponents) |
Sets the value of listOfSpatialComponents
|
Modifier and Type | Class | Description |
---|---|---|
class |
ListOfObjectives |
ListOfObjectives adds an additional required attribute: 'activeObjective'. |
Modifier and Type | Method | Description |
---|---|---|
ListOf<Objective> |
ListOfObjectives.clone() |
|
ListOf<FluxBound> |
FBCModelPlugin.getListOfFluxBounds() |
Deprecated.
Only defined in FBC version 1.
|
ListOf<FluxObjective> |
Objective.getListOfFluxObjectives() |
Returns the listOfFluxObjectives
|
ListOf<GeneProduct> |
FBCModelPlugin.getListOfGeneProducts() |
Returns the
FBCModelPlugin.listOfGeneProducts . |
ListOf<Species> |
FBCSpeciesPlugin.getParent() |
|
ListOf<Species> |
FBCSpeciesPlugin.getParentSBMLObject() |
Modifier and Type | Method | Description |
---|---|---|
void |
FBCModelPlugin.setListOfFluxBounds(ListOf<FluxBound> listOfFluxBounds) |
Deprecated.
Only defined in FBC version 1.
|
void |
Objective.setListOfFluxObjectives(ListOf<FluxObjective> listOfFluxObjectives) |
This list houses the actual fluxes to partake in this objective function,
which are encoded by
FluxObjective
Sets the given ListOf<FluxObjective> . |
void |
FBCModelPlugin.setListOfGeneProducts(ListOf<GeneProduct> listOfGeneProducts) |
Sets the given
ListOf<GeneProduct> . |
void |
FBCModelPlugin.setListOfObjectives(ListOf<Objective> listOfObjectives) |
Sets the given
ListOf<Objective> . |
Constructor | Description |
---|---|
ListOfObjectives(ListOf<Objective> listOf) |
Creates a new
ListOfObjectives instance. |
Modifier and Type | Class | Description |
---|---|---|
class |
ListOfMemberConstraint |
Deprecated.
This class was removed from the specifications as of version 0.7
(2015-11-24) as no software wanted to implement support for it.
It might be added back in a future version of the specifications
if somebody want to implement it.
|
class |
ListOfMembers |
Modifier and Type | Method | Description |
---|---|---|
ListOf<Group> |
GroupsModelPlugin.getListOfGroups() |
Returns the listOfGroups.
|
Modifier and Type | Method | Description |
---|---|---|
void |
GroupsModelPlugin.setListOfGroups(ListOf<Group> listOfGroups) |
Modifier and Type | Method | Description |
---|---|---|
ListOf<GraphicalObject> |
Layout.getListOfAdditionalGraphicalObjects() |
|
ListOf<CompartmentGlyph> |
Layout.getListOfCompartmentGlyphs() |
|
ListOf<CurveSegment> |
Curve.getListOfCurveSegments() |
|
ListOf<CurveSegment> |
ICurve.getListOfCurveSegments() |
|
ListOf<Layout> |
LayoutModelPlugin.getListOfLayouts() |
|
ListOf<ReactionGlyph> |
Layout.getListOfReactionGlyphs() |
|
ListOf<ReferenceGlyph> |
GeneralGlyph.getListOfReferenceGlyphs() |
Returns the
GeneralGlyph.listOfReferenceGlyphs . |
ListOf<SpeciesGlyph> |
Layout.getListOfSpeciesGlyphs() |
|
ListOf<SpeciesReferenceGlyph> |
ReactionGlyph.getListOfSpeciesReferenceGlyphs() |
Returns the list of
SpeciesReferenceGlyph s. |
ListOf<GraphicalObject> |
GeneralGlyph.getListOfSubGlyphs() |
Returns the listOfSubGlyphs.
|
ListOf<TextGlyph> |
Layout.getListOfTextGlyphs() |
Modifier and Type | Method | Description |
---|---|---|
void |
Layout.setAddGraphicalObjects(ListOf<GraphicalObject> addGraphicalObjects) |
This element is optional.
|
void |
Layout.setListOfAdditionalGraphicalObjects(ListOf<GraphicalObject> additionalGraphicalObjects) |
Sets the
Layout.listOfAdditionalGraphicalObjects . |
void |
Layout.setListOfCompartmentGlyphs(ListOf<CompartmentGlyph> compartmentGlyphs) |
This element is optional.
|
void |
Curve.setListOfCurveSegments(ListOf<CurveSegment> listOfCurveSegments) |
|
void |
ICurve.setListOfCurveSegments(ListOf<CurveSegment> listOfCurveSegments) |
The listOfCurveSegments element contains arbitrary number of curve segments that
can be either of type
LineSegment or of type CubicBezier . |
void |
LayoutModelPlugin.setListOfLayouts(ListOf<Layout> listOfLayouts) |
The listOfLayouts element must contain at least one
Layout . |
void |
Layout.setListOfReactionGlyphs(ListOf<ReactionGlyph> reactionGlyphs) |
This element is optional.
|
void |
GeneralGlyph.setListOfReferenceGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph) |
Sets the
GeneralGlyph.listOfReferenceGlyphs . |
void |
Layout.setListOfSpeciesGlyphs(ListOf<SpeciesGlyph> speciesGlyphs) |
This element is optional.
|
void |
ReactionGlyph.setListOfSpeciesReferenceGlyphs(ListOf<SpeciesReferenceGlyph> listOfSpeciesReferencesGlyph) |
Sets the list of
SpeciesReferenceGlyph s. |
void |
ReactionGlyph.setListOfSpeciesReferencesGlyph(ListOf<SpeciesReferenceGlyph> listOfSpeciesReferencesGlyph) |
Deprecated.
|
void |
GeneralGlyph.setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs) |
The listOfSubGlyphs is an optional list that can contain sub-glyphs of the
GeneralGlyph . |
void |
Layout.setListOfTextGlyphs(ListOf<TextGlyph> textGlyphs) |
This element is optional.
|
Modifier and Type | Class | Description |
---|---|---|
class |
SubListOfSpeciesFeature |
Allows to regroup a set of
SpeciesFeature that have a specific Relation between them. |
Modifier and Type | Method | Description |
---|---|---|
void |
MultiCompartmentPlugin.setListOfCompartmentReferences(ListOf<CompartmentReference> listOfCompartmentReferences) |
Sets the given
ListOf<CompartmentReference> . |
void |
MultiSpeciesType.setListOfInSpeciesTypeBonds(ListOf<InSpeciesTypeBond> listOfInSpeciesTypeBonds) |
Sets the given
ListOf<InSpeciesTypeBond> . |
void |
MultiSpeciesPlugin.setListOfOutwardBindingSites(ListOf<OutwardBindingSite> listOfOutwardBindingSites) |
Sets the given
ListOf<OutwardBindingSite> . |
void |
SpeciesFeatureType.setListOfPossibleSpeciesFeatureValues(ListOf<PossibleSpeciesFeatureValue> listOfPossibleSpeciesFeatureValues) |
Sets the given
ListOf<PossibleSpeciesFeatureValue> . |
void |
MultiSpeciesPlugin.setListOfSpeciesFeatures(ListOf<SpeciesFeature> listOfSpeciesFeatures) |
Sets the given
ListOf<SpeciesFeature> . |
void |
MultiSpeciesType.setListOfSpeciesFeatureTypes(ListOf<SpeciesFeatureType> listOfSpeciesFeatureTypes) |
Sets the given
ListOf<SpeciesFeatureType> . |
void |
SpeciesFeature.setListOfSpeciesFeatureValues(ListOf<SpeciesFeatureValue> listOfSpeciesFeatureValues) |
Sets the given
ListOf<SpeciesFeatureValue> . |
void |
MultiSpeciesType.setListOfSpeciesTypeComponentIndexes(ListOf<SpeciesTypeComponentIndex> listOfSpeciesTypeComponentIndexes) |
Sets the given
ListOf<SpeciesTypeComponentIndex> . |
void |
MultiSpeciesReferencePlugin.setListOfSpeciesTypeComponentMapInProducts(ListOf<SpeciesTypeComponentMapInProduct> listOfSpeciesTypeComponentMapInProducts) |
Sets the given
ListOf<SpeciesTypeComponentMapInProduct> . |
void |
MultiSpeciesType.setListOfSpeciesTypeInstances(ListOf<SpeciesTypeInstance> listOfSpeciesTypeInstances) |
Sets the given
ListOf<SpeciesTypeInstance> . |
void |
MultiModelPlugin.setListOfSpeciesTypes(ListOf<MultiSpeciesType> listOfSpeciesTypes) |
Sets the listOfSpeciesTypes.
|
void |
MultiSpeciesPlugin.setListOfSubListOfSpeciesFeatures(ListOf<SubListOfSpeciesFeature> listOfSubListOfSpeciesFeatures) |
Sets the given
ListOf<SubListOfSpeciesFeature> . |
Modifier and Type | Method | Description |
---|---|---|
ListOf<FunctionTerm> |
Transition.getListOfFunctionTerms() |
|
ListOf<Input> |
Transition.getListOfInputs() |
|
ListOf<Output> |
Transition.getListOfOutputs() |
|
ListOf<QualitativeSpecies> |
QualModelPlugin.getListOfQualitativeSpecies() |
|
ListOf<Transition> |
QualModelPlugin.getListOfTransitions() |
Modifier and Type | Method | Description |
---|---|---|
void |
Transition.setListOfFunctionTerms(ListOf<FunctionTerm> loft) |
The
Transition element contains exactly one list of FunctionTerm s. |
void |
Transition.setListOfInputs(ListOf<Input> loi) |
The
Transition element contains at most one list of Input s. |
void |
Transition.setListOfOutputs(ListOf<Output> loo) |
The
Transition element contains at most one list of Output s. |
void |
QualModelPlugin.setListOfQualitativeSpecies(ListOf<QualitativeSpecies> listOfQualitativeSpecies) |
QualModelPlugin may contain at most one listOfQualitativeSpecies
which must contain at least on QualitativeSpecies . |
void |
QualModelPlugin.setListOfTransitions(ListOf<Transition> listOfTransitions) |
QualModelPlugin can contain at most one listOfTransitions which must contain
at least one Transition . |
Modifier and Type | Class | Description |
---|---|---|
class |
ListOfGlobalRenderInformation |
Derives from the
ListOf class and contains one or more objects of type GlobalRenderInformation . |
class |
ListOfLocalRenderInformation |
Derives from the
ListOf class and contains one or more objects of type LocalRenderInformation . |
class |
ListOfRenderInformation<T extends RenderInformationBase> |
Derives from the
ListOf class and contains one or more objects of type RenderInformationBase . |
Modifier and Type | Method | Description |
---|---|---|
ListOf<ColorDefinition> |
RenderInformationBase.getListOfColorDefinitions() |
|
ListOf<CurveSegment> |
Polygon.getListOfCurveSegments() |
Returns the
Polygon.listOfCurveSegments . |
ListOf<CurveSegment> |
RenderCurve.getListOfCurveSegments() |
Returns the
RenderCurve.listOfCurveSegments . |
ListOf<RenderPoint> |
Polygon.getListOfElements() |
|
ListOf<RenderPoint> |
RenderCurve.getListOfElements() |
|
ListOf<Transformation2D> |
RenderGroup.getListOfElements() |
Returns the listOfElements.
|
ListOf<GradientBase> |
RenderInformationBase.getListOfGradientDefinitions() |
|
ListOf<GradientStop> |
GradientBase.getListOfGradientStops() |
|
ListOf<LineEnding> |
RenderInformationBase.getListOfLineEndings() |
|
ListOf<LocalStyle> |
LocalRenderInformation.getListOfLocalStyles() |
|
ListOf<Style> |
GlobalRenderInformation.getListOfStyles() |
Modifier and Type | Method | Description |
---|---|---|
void |
RenderInformationBase.setListOfColorDefinitions(ListOf<ColorDefinition> listOfColorDefinitions) |
|
void |
Polygon.setListOfCurveSegments(ListOf<CurveSegment> listOfCurveSegments) |
Sets the given
ListOf<CurveSegment> . |
void |
RenderCurve.setListOfCurveSegments(ListOf<CurveSegment> listOfCurveSegments) |
Sets the given
ListOf<CurveSegment> . |
void |
Polygon.setListOfElements(ListOf<RenderPoint> listOfElements) |
Set the value of listOfElements
|
void |
RenderCurve.setListOfElements(ListOf<RenderPoint> listOfElements) |
|
void |
RenderGroup.setListOfElements(ListOf<Transformation2D> listOfElements) |
Sets the given
ListOf<Transformation2D> . |
void |
RenderInformationBase.setListOfGradientDefinitions(ListOf<GradientBase> listOfGradientDefintions) |
|
void |
GradientBase.setListOfGradientStops(ListOf<GradientStop> listOfGradientStops) |
|
void |
RenderInformationBase.setListOfLineEndings(ListOf<LineEnding> listOfLineEndings) |
|
void |
LocalRenderInformation.setListOfLocalStyles(ListOf<LocalStyle> listOfLocalStyles) |
|
void |
GlobalRenderInformation.setListOfStyles(ListOf<Style> listOfStyles) |
Constructor | Description |
---|---|
RenderListOfLayoutsPlugin(ListOf<Layout> listOfLayouts) |
Creates an RenderModelPlugin instance
|
Modifier and Type | Method | Description |
---|---|---|
ListOf<ChangedMath> |
ReqSBasePlugin.getListOfChangedMaths() |
Returns the listOfChangedMaths.
|
Modifier and Type | Method | Description |
---|---|---|
void |
ReqSBasePlugin.setListOfChangedMaths(ListOf<ChangedMath> listOfChangedMaths) |
Sets the given
ListOf<ChangedMath> . |
Modifier and Type | Method | Description |
---|---|---|
ListOf<AdjacentDomains> |
Geometry.getListOfAdjacentDomains() |
Returns the listOfAdjacentDomains.
|
ListOf<AnalyticVolume> |
AnalyticGeometry.getListOfAnalyticVolumes() |
Returns the listOfAnalyticVolumes.
|
ListOf<CoordinateComponent> |
Geometry.getListOfCoordinateComponents() |
Returns the listOfCoordinateComponents.
|
ListOf<CSGNode> |
CSGSetOperator.getListOfCSGNodes() |
Returns the listOfCSGNodes.
|
ListOf<CSGObject> |
CSGeometry.getListOfCSGObjects() |
Returns the listOfCSGObjects.
|
ListOf<Domain> |
Geometry.getListOfDomains() |
Returns the listOfDomains.
|
ListOf<DomainType> |
Geometry.getListOfDomainTypes() |
Returns the listOfDomainTypes.
|
ListOf<GeometryDefinition> |
Geometry.getListOfGeometryDefinitions() |
Returns the listOfGeometryDefinitions.
|
ListOf<GeometryDefinition> |
MixedGeometry.getListOfGeometryDefinitions() |
Returns the listOfGeometryDefinitions.
|
ListOf<InteriorPoint> |
Domain.getListOfInteriorPoints() |
Returns the listOfInteriorPoints.
|
ListOf<OrdinalMapping> |
MixedGeometry.getListOfOrdinalMappings() |
Returns the listOfOrdinalMappings.
|
ListOf<ParametricObject> |
ParametricGeometry.getListOfParametricObjects() |
Returns the listOfParametricObjects.
|
ListOf<SampledField> |
Geometry.getListOfSampledFields() |
Returns the listOfSampledFields.
|
ListOf<SampledVolume> |
SampledFieldGeometry.getListOfSampledVolumes() |
Returns the listOfSampledVolumes.
|
ListOf<Compartment> |
SpatialCompartmentPlugin.getParent() |
|
ListOf<Compartment> |
SpatialCompartmentPlugin.getParentSBMLObject() |
Modifier and Type | Method | Description |
---|---|---|
void |
Geometry.setListOfAdjacentDomains(ListOf<AdjacentDomains> listOfAdjacentDomains) |
Sets the given
ListOf<AdjacentDomain> . |
void |
AnalyticGeometry.setListOfAnalyticVolumes(ListOf<AnalyticVolume> listOfAnalyticVolumes) |
Sets the given
ListOf<AnalyticVolume> . |
void |
Geometry.setListOfCoordinateComponents(ListOf<CoordinateComponent> listOfCoordinateComponents) |
Sets the given
ListOf<CoordinateComponent> . |
void |
CSGSetOperator.setListOfCSGNodes(ListOf<CSGNode> listOfCSGNodes) |
Sets the given
ListOf<CSGNode> . |
void |
CSGeometry.setListOfCSGObjects(ListOf<CSGObject> listOfCSGObjects) |
Sets the given
ListOf<CSGObject> . |
void |
Geometry.setListOfDomains(ListOf<Domain> listOfDomains) |
Sets the given
ListOf<Domain> . |
void |
Geometry.setListOfDomainTypes(ListOf<DomainType> listOfDomainTypes) |
Sets the given
ListOf<DomainType> . |
void |
Geometry.setListOfGeometryDefinitions(ListOf<GeometryDefinition> listOfGeometryDefinitions) |
Sets the given
ListOf<GeometryDefinition> . |
void |
MixedGeometry.setListOfGeometryDefinitions(ListOf<GeometryDefinition> listOfGeometryDefinitions) |
Sets the given
ListOf<GeometryDefinition> . |
void |
Domain.setListOfInteriorPoints(ListOf<InteriorPoint> listOfInteriorPoints) |
Sets the given
ListOf<InteriorPoint> . |
void |
MixedGeometry.setListOfOrdinalMappings(ListOf<OrdinalMapping> listOfOrdinalMappings) |
Sets the given
ListOf<OrdinalMapping> . |
void |
ParametricGeometry.setListOfParametricObjects(ListOf<ParametricObject> listOfParametricObjects) |
Sets the given
ListOf<ParametricObject> . |
void |
Geometry.setListOfSampledFields(ListOf<SampledField> listOfSampledFields) |
Sets the given
ListOf<SampledField> . |
void |
SampledFieldGeometry.setListOfSampledVolumes(ListOf<SampledVolume> listOfSampledVolumes) |
Sets the given
ListOf<SampledVolume> . |
Modifier and Type | Class | Description |
---|---|---|
class |
ListOfWithName<T extends SBase> |
Deprecated.
since JSBML 1.2 and the introduction of
setOtherListName(String) , this class is not necessary any more. |
Modifier and Type | Method | Description |
---|---|---|
ListOf<T> |
ListOfWithName.clone() |
Deprecated.
|