Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.layout |
Provides classes for the Layout
package.
|
org.sbml.jsbml.ext.multi |
Provides classes for the Multi package.
|
org.sbml.jsbml.ext.qual |
Provides classes for the Qualitative Models package.
|
Modifier and Type | Class | Description |
---|---|---|
class |
Reaction |
Represents the reaction XML element of a SBML file.
|
class |
Species |
Represents the species XML element of a SBML file.
|
Modifier and Type | Class | Description |
---|---|---|
class |
CompartmentGlyph |
The
CompartmentGlyph class is derived from GraphicalObject
and inherits its attributes. |
Modifier and Type | Class | Description |
---|---|---|
class |
BindingSiteSpeciesType |
A
BindingSiteSpeciesType object is a binding site, and therefore its instance can further define the bindingStatus
attribute and can participate a binding internally and explicitly in an InSpeciesTypeBond object, or externally and
implicitly defined by an OutwardBindingSite object. |
class |
CompartmentReference |
|
class |
IntraSpeciesReaction |
|
class |
MultiSpeciesType |
The element MultiSpeciesType, which is part of SBML Level 2 Version 4 specification, is not part
of SBML Level 3 Version 1 Core any more.
|
Modifier and Type | Class | Description |
---|---|---|
class |
QualitativeSpecies |
Similarly to the
Species in SBML, the components of qualitative
models refer to pools of entities that are considered indistinguishable and
are each located in a specific Compartment . |