Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.util.filters |
Filters are useful to decide whether or not to accept a certain item.
|
Modifier and Type | Method | Description |
---|---|---|
static CVTerm.Qualifier |
CVTerm.Qualifier.getBiologicalQualifierFor(java.lang.String elementNameEquivalent) |
|
CVTerm.Qualifier |
CVTerm.getBiologicalQualifierType() |
Returns the
CVTerm.Qualifier for this CVTerm, only if it if of type CVTerm.Type.BIOLOGICAL_QUALIFIER , null otherwise. |
static CVTerm.Qualifier |
CVTerm.Qualifier.getModelQualifierFor(java.lang.String elementNameEquivalent) |
|
CVTerm.Qualifier |
CVTerm.getModelQualifierType() |
Returns the
CVTerm.Qualifier for this CVTerm, only if it if of type CVTerm.Type.MODEL_QUALIFIER , null otherwise. |
CVTerm.Qualifier |
CVTerm.getQualifier() |
Returns the
CVTerm.Qualifier for this CVTerm. |
static CVTerm.Qualifier |
CVTerm.Qualifier.valueOf(java.lang.String name) |
Returns the enum constant of this type with the specified name.
|
static CVTerm.Qualifier[] |
CVTerm.Qualifier.values() |
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method | Description |
---|---|---|
boolean |
AbstractSBase.addResources(CVTerm.Qualifier qualifier,
java.lang.String... resources) |
Adds all the given resources to the first
CVTerm with the given
CVTerm.Qualifier or, if no such term exists yet, creates one. |
boolean |
Annotation.addResources(CVTerm.Qualifier qualifier,
java.lang.String... resources) |
Adds all the given resources to the first
CVTerm with the given
CVTerm.Qualifier or, if no such term exists yet, creates one. |
java.util.List<CVTerm> |
AbstractSBase.filterCVTerms(CVTerm.Qualifier qualifier) |
|
java.util.List<java.lang.String> |
AbstractSBase.filterCVTerms(CVTerm.Qualifier qualifier,
boolean recursive,
java.lang.String... patterns) |
|
java.util.List<java.lang.String> |
AbstractSBase.filterCVTerms(CVTerm.Qualifier qualifier,
java.lang.String pattern) |
|
java.util.List<java.lang.String> |
AbstractSBase.filterCVTerms(CVTerm.Qualifier qualifier,
java.lang.String pattern,
boolean recursive) |
|
java.util.List<CVTerm> |
Annotation.filterCVTerms(CVTerm.Qualifier qualifier) |
Returns a list of CVTerm having the given qualifier.
|
java.util.List<java.lang.String> |
Annotation.filterCVTerms(CVTerm.Qualifier qualifier,
java.lang.String pattern) |
Returns a list of CVTerm having the given qualifier and
where the URI contains the given pattern.
|
java.util.List<CVTerm> |
SBase.filterCVTerms(CVTerm.Qualifier qualifier) |
Returns a list of all the
CVTerm with the given CVTerm.Qualifier . |
java.util.List<java.lang.String> |
SBase.filterCVTerms(CVTerm.Qualifier qualifier,
boolean recursive,
java.lang.String... patterns) |
Returns a list of resource URIs for the given
CVTerm.Qualifier that match
the
given patterns. |
java.util.List<java.lang.String> |
SBase.filterCVTerms(CVTerm.Qualifier qualifier,
java.lang.String pattern) |
Queries the list of controlled vocabulary terms (
CVTerm ) for those
terms whose CVTerm.Qualifier is of the given type and selects only those
resources from
these terms that contain the given pattern. |
java.util.List<java.lang.String> |
SBase.filterCVTerms(CVTerm.Qualifier qualifier,
java.lang.String pattern,
boolean recursive) |
Returns a list of resource URIs for the given
CVTerm.Qualifier that match
the
given pattern. |
static java.lang.String |
Annotation.getElementNameEquivalentToQualifier(CVTerm.Qualifier qualifier) |
Returns a
String which represents the given CVTerm.Qualifier . |
void |
CVTerm.setBiologicalQualifierType(CVTerm.Qualifier qualifier) |
Sets the biological qualifier type of this
CVTerm . |
void |
CVTerm.setModelQualifierType(CVTerm.Qualifier qualifier) |
Sets the model qualifier type of this
CVTerm . |
void |
CVTerm.setQualifier(CVTerm.Qualifier qualifier) |
Sets the
CVTerm.Qualifier of this CVTerm , sets at the same time the CVTerm.Type to the proper value. |
Constructor | Description |
---|---|
CVTerm(CVTerm.Qualifier qualifier,
java.lang.String... resources) |
Guesses the
CVTerm.Type argument and sets the CVTerm.Qualifier
attribute appropriately. |
CVTerm(CVTerm.Type type,
CVTerm.Qualifier qualifier,
java.lang.String... resources) |
Creates a new
CVTerm with the given CVTerm.Type and
CVTerm.Qualifier pointing to all given resources. |
Modifier and Type | Method | Description |
---|---|---|
CVTerm.Qualifier |
CVTermFilter.getQualifier() |
Modifier and Type | Method | Description |
---|---|---|
void |
CVTermFilter.setQualifier(CVTerm.Qualifier qualifier) |
Constructor | Description |
---|---|
CVTermFilter(CVTerm.Qualifier qualifier) |
|
CVTermFilter(CVTerm.Qualifier qualifier,
java.lang.String pattern) |