Package | Description |
---|---|
org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
org.sbml.jsbml.ext.arrays | |
org.sbml.jsbml.ext.qual |
Provides classes for the Qualitative Models package.
|
org.sbml.jsbml.ext.spatial |
Provides classes for the
Spatial Geometries and Processes package.
|
Modifier and Type | Class | Description |
---|---|---|
class |
AlgebraicRule |
Represents the algebraicRule XML element of a SBML file.
|
class |
AssignmentRule |
Represents the assignmentRule XML element of a SBML file.
|
class |
Constraint |
Represents the constraint XML element of a SBML file.
|
class |
Delay |
Represents the delay subnode of an event element.
|
class |
EventAssignment |
Represents the eventAssignment XML element of a SBML file.
|
class |
ExplicitRule |
An explicit
Rule is a rule that explicitly declares its variable
element. |
class |
FunctionDefinition |
Represents the functionDefinition XML element of a SBML file.
|
class |
InitialAssignment |
Represents the initialAssignment XML element of a SBML file.
|
class |
KineticLaw |
Represents the kineticLaw XML element of a SBML file.
|
class |
Priority |
This class represents the priority element in SBML.
|
class |
RateRule |
Represents the rateRule XML element of a SBML file.
|
class |
Rule |
|
class |
StoichiometryMath |
Deprecated.
Since SBML Level 3 Version 1 use
AssignmentRule with
instances of SpeciesReference as Variable
instead. |
class |
Trigger |
Represents the trigger XML element of a SBML file.
|
Modifier and Type | Method | Description |
---|---|---|
abstract AbstractMathContainer |
AbstractMathContainer.clone() |
Constructor | Description |
---|---|
AbstractMathContainer(AbstractMathContainer sb) |
Creates a MathContainer instance from a given MathContainer.
|
Modifier and Type | Class | Description |
---|---|---|
class |
Index |
The
Index is used to referenced an arrayed element specified in
an attribute. |
Modifier and Type | Class | Description |
---|---|---|
class |
FunctionTerm |
Each
FunctionTerm is also associated with a result and in addition to a Boolean
function inside a Math element that can be used to set the conditions under which this term
is selected. |
Modifier and Type | Class | Description |
---|---|---|
class |
AnalyticVolume |